CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21659	Canola	nucleus	98.11	98.52
CDY48712	Canola	plastid	93.89	94.69
CDY03357	Canola	plastid	93.89	94.29
AT2G19540.1	Thale cress	cytosol, mitochondrion, nucleus	87.37	88.49
CDX82701	Canola	nucleus	71.37	87.37
CDY35872	Canola	cytosol, nucleus, plastid	61.47	85.88
Os12t0132400-01	Rice	nucleus	24.21	75.16
VIT_11s0016g02270.t01	Wine grape	nucleus	74.74	74.89
KRH58776	Soybean	nucleus	72.0	72.3
PGSC0003DMT400065692	Potato	cytoskeleton, cytosol, nucleus	45.47	70.82
PGSC0003DMT400034220	Potato	nucleus	68.84	69.72
GSMUA_Achr8P09420_001	Banana	cytosol, nucleus, plastid	68.63	69.66
KRH42676	Soybean	nucleus	70.95	68.22
Solyc07g039200.2.1	Tomato	nucleus	65.47	67.32
Solyc05g018780.1.1	Tomato	cytosol, mitochondrion, nucleus	51.37	64.38
Os11t0134500-01	Rice	nucleus	62.95	64.3
Solyc05g014090.1.1	Tomato	mitochondrion	53.47	63.98
Zm00001d044641_P004	Maize	cytosol, mitochondrion, nucleus, plastid	63.79	63.39
TraesCS4A01G187400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	64.21	63.28
TraesCS4B01G131200.1	Wheat	nucleus	64.0	63.07
HORVU4Hr1G026330.2	Barley	cytosol, mitochondrion, nucleus, plastid	63.79	62.86
TraesCS4D01G126000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	63.79	62.86
EES15567	Sorghum	cytosol, mitochondrion, nucleus, plastid	63.16	62.63
Zm00001d010850_P003	Maize	plasma membrane	62.95	62.16
Solyc05g025630.1.1	Tomato	cytosol, mitochondrion, nucleus	60.21	61.77
TraesCS5B01G137200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	60.0	59.01
OQU82815	Sorghum	mitochondrion	56.63	58.61
TraesCS5A01G139800.1	Wheat	mitochondrion, plastid	59.58	58.59
CDY29763	Canola	endoplasmic reticulum	17.47	24.63
CDY70131	Canola	cytosol	10.74	24.4
CDY47479	Canola	cytosol	20.84	23.91
CDY26787	Canola	cytosol	20.84	23.91
CDY02805	Canola	nucleus	21.05	23.87
CDY62688	Canola	nucleus	21.26	23.71
CDY32715	Canola	nucleus	20.63	23.56
CDY43875	Canola	nucleus	21.05	23.47
CDX81933	Canola	nucleus	22.95	22.52
CDY43523	Canola	nucleus	22.32	22.32
CDY35867	Canola	cytosol	13.26	22.18
CDY48711	Canola	nucleus	23.16	21.87
CDY06779	Canola	nucleus	22.32	21.86
CDY03358	Canola	nucleus	23.16	21.83
CDY21661	Canola	nucleus	23.16	21.74
CDX90175	Canola	cytosol	13.89	20.82
CDY43325	Canola	cytosol	13.68	20.5
CDX82696	Canola	nucleus	18.95	20.45
CDY70287	Canola	nucleus	7.79	20.22
CDY50786	Canola	cytosol	13.05	19.56
CDX99799	Canola	cytosol	13.05	19.56
CDY58569	Canola	cytosol	21.47	16.04
CDX88663	Canola	nucleus	21.47	16.04
Os12t0132300-02	Rice	cytosol	0.84	2.19
Os11t0134400-00	Rice	cytosol	0.84	2.19

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EnsemblPlants:CDX81935	ProteinID:CDX81935	ProteinID:CDX81935.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00136898001	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFAM:PF12265	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850
PANTHER:PTHR22850:SF6	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EDC350	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

BnaC08g36660D

Coordinates

chrLK031826:+:1557451..1559843

Molecular Weight (calculated)

52049.6 Da

IEP (calculated)

4.642

GRAVY (calculated)

-0.451

Length

475 amino acids

Sequence
(BLAST)

001: MVRSINPKKA KRKNKNKGEA SSSSSIPSIP TRVWQPGVDK LEDGEELQCD PSVYNSLHGF HVGWPCLSFD ILGDKLGLNR TEFPHTLYMV AGTQAEKAPL
101: NSIGVFKISN VSGKRRDVVP KTLVNGDDAM EDEDDEDEDT DSDDEESEDG GASTVPVIQV RRVAHHGCVN RIRAMPQSPH ICVSWADSGH VQVWDMSSHL
201: NALAESETEG KDGISPVLNQ APLVNFSGHK DEGYAIDWSP ATPGRLLSGD CMSMIHLWEP ASGSWTVDPI PLAGHTASVE DLQWSPAEAN VFASCSVDKT
301: VAVWDVRTGK SPALSFKAHD ADVNVISWNR LASCMLASGS DDGAFSIHDL RVIKDGDAKV AHFEYHKHPI TSIEWSAHES STLAVSSGDN QLTIWDLSLE
401: KDEEEEAEFK AQTKEQVNTP QDLPPQLLFV HQGQKDLKEL HWHNQIPGMI ISTAADGFNI LMPYNIQNTL PDLAP

Best Arabidopsis Sequence Match ( AT2G19540.1 )
(BLAST)

001: MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS
101: IGLFKITNVS GKRRDVVPKT FGNGEDEDED DEDDSDSDDD DGDEASKTPN IQVRRVAHHG CVNRIRAMPQ NSHICVSWAD SGHVQVWDMS SHLNALAESE
201: TEGKDGTSPV LNQAPLVNFS GHKDEGYAID WSPATAGRLL SGDCKSMIHL WEPASGSWAV DPIPFAGHTA SVEDLQWSPA EENVFASCSV DGSVAVWDIR
301: LGKSPALSFK AHNADVNVIS WNRLASCMLA SGSDDGTFSI RDLRLIKGGD AVVAHFEYHK HPITSIEWSA HEASTLAVTS GDNQLTIWDL SLEKDEEEEA
401: EFNAQTKELV NTPQDLPPQL LFVHQGQKDL KELHWHNQIP GMIISTAGDG FNILMPYNIQ NTLPSELPA

Arabidopsis Description

Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.