CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47479	Canola	cytosol	98.79	98.79
AT2G16780.1	Thale cress	cytosol	89.86	89.64
CDY70131	Canola	cytosol	44.93	89.0
VIT_03s0038g02430.t01	Wine grape	cytosol	68.36	70.57
Solyc01g111590.2.1	Tomato	cytosol	67.63	69.48
PGSC0003DMT400015787	Potato	cytosol	66.91	68.73
KRH24317	Soybean	nucleus	64.98	67.08
KRH29002	Soybean	nucleus	64.49	66.25
GSMUA_Achr1P26410_001	Banana	nucleus	57.49	58.48
GSMUA_Achr8P33950_001	Banana	nucleus	57.0	58.42
HORVU2Hr1G092350.1	Barley	cytosol	19.57	58.27
EER97107	Sorghum	cytosol	52.17	53.6
TraesCS5D01G337800.1	Wheat	cytosol	51.69	52.97
TraesCS5A01G331900.1	Wheat	cytosol	51.69	52.84
TraesCS5B01G332200.1	Wheat	cytosol	51.93	52.7
Os09t0540600-01	Rice	cytosol	52.17	52.68
Zm00001d022614_P001	Maize	cytosol	51.21	52.61
CDY43875	Canola	nucleus	53.86	52.35
CDY02805	Canola	nucleus	52.42	51.79
CDY62688	Canola	nucleus	53.14	51.64
CDY32715	Canola	nucleus	50.0	49.76
HORVU5Hr1G084160.2	Barley	cytosol	48.55	47.97
CDY58569	Canola	cytosol	55.07	35.85
CDX88663	Canola	nucleus	55.07	35.85
CDY43523	Canola	nucleus	32.13	28.0
CDY06779	Canola	nucleus	32.61	27.84
CDY35867	Canola	cytosol	18.84	27.46
CDX81933	Canola	nucleus	31.88	27.27
CDY48711	Canola	nucleus	32.37	26.64
CDY03358	Canola	nucleus	32.37	26.59
CDY29763	Canola	endoplasmic reticulum	21.26	26.11
CDY21661	Canola	nucleus	31.88	26.09
CDY43325	Canola	cytosol	17.39	22.71
CDX99799	Canola	cytosol	17.39	22.71
CDY50786	Canola	cytosol	17.15	22.4
CDX90175	Canola	cytosol	17.15	22.4
CDX82696	Canola	nucleus	23.67	22.27
CDY35872	Canola	cytosol, nucleus, plastid	18.12	22.06
CDY70287	Canola	nucleus	9.66	21.86
CDX81935	Canola	nucleus	23.91	20.84
CDY48712	Canola	plastid	23.67	20.81
CDY03357	Canola	plastid	23.67	20.72
CDY21659	Canola	nucleus	23.43	20.51
CDX82701	Canola	nucleus	17.87	19.07

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	GO:A0A078GNM0	UniProt:A0A078GNM0	EnsemblPlants:CDY26787	ProteinID:CDY26787
ProteinID:CDY26787.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00035720001	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12265	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF137	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0004EC0178	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

BnaC09g09140DBnaC09g09140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNM0]

Coordinates

chrLK032194:-:216547..218665

Molecular Weight (calculated)

46589.3 Da

IEP (calculated)

4.288

GRAVY (calculated)

-0.493

Length

414 amino acids

Sequence
(BLAST)

001: MADEGSKEDA GMDQVEEDFS IWKKNTPFLY DLMISNPLEW PSLTVHWVPS PPSPYAADPY FGVHKLILGT HTSGDAQDFL MVADAVIPTP DAEPGLGGTN
101: QDPIVPKVEI RQKIRVDGEV NRARCMPQKP TLVGAKTSGC EVFLFDYAKH ASKPQTSDCD PDLRLLGHDM EGYGLSWSPF KEGYLLSGSQ DKKICLWDVS
201: ATPQDKVLNA MFVYEGHECA VEDVAWHMKN ENLFGSAGDD GRLVIWDTRT NQMQHQVKVH EKEVNYLSFN PFNEWVLATA SSDSTVALFD LRKLNVPLHV
301: LSSHEGEVFQ VEWDPNHETV LASSGEDRRL MVWDLNRVGE EQLEIELDAE DGPPELLFSH GGHKAKISDF AWNKNEPWVI ASVAEDNSLQ VWQMAESIYR
401: DEDENEIDED IKQS

Best Arabidopsis Sequence Match ( AT2G16780.1 )
(BLAST)

001: MADEGKEETG MGQVEEDFSV WKKNTPFLYD LLISHPLEWP SLTVHWVPST PNPYVADSYF GVHKLILGTH TSGSAQDFLM VADVVTPTPN AEPGIGGANQ
101: DPFIPKVEIR QRIRVDGEVN RARCMPQKPT LVGAKTSGCE VFLFDYAKHA AKSQTSECDP DLRLVGHDKE GYGLSWSPFK EGYLLSGSQD QKICLWDVSA
201: TPQDKVLNAM FVYEGHESAI ADVSWHMKNE NLFGSAGEDG RLVIWDTRTN QMQHQVKVHE REVNYLSFNP FNEWVLATAS SDSTVALFDL RKLNAPLHVM
301: SSHEGEVFQV EWDPNHETVL ASSGEDRRLM VWDLNRVGEE QLEIELDAED GPPELLFSHG GHKAKISDFA WNKNEPWVIA SVAEDNSLQV WQMAESIYRD
401: EEDAEDIKED ITQQS

Arabidopsis Description

MSI2WD-40 repeat-containing protein MSI2 [Source:UniProtKB/Swiss-Prot;Acc:O22468]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.