Factsheet for Os09t0540600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G331900.1	Wheat	cytosol	82.68	83.7
TraesCS5B01G332200.1	Wheat	cytosol	82.68	83.09
TraesCS5D01G337800.1	Wheat	cytosol	81.46	82.67
EER97107	Sorghum	cytosol	81.22	82.63
HORVU2Hr1G092350.1	Barley	cytosol	27.8	82.01
Zm00001d022614_P001	Maize	cytosol	78.78	80.15
HORVU5Hr1G084160.2	Barley	cytosol	77.8	76.13
GSMUA_Achr8P33950_001	Banana	nucleus	64.15	65.1
GSMUA_Achr1P26410_001	Banana	nucleus	62.93	63.39
VIT_03s0038g02430.t01	Wine grape	cytosol	56.1	57.36
PGSC0003DMT400015787	Potato	cytosol	55.37	56.33
KRH29002	Soybean	nucleus	55.37	56.33
Solyc01g111590.2.1	Tomato	cytosol	54.88	55.83
KRH24317	Soybean	nucleus	54.15	55.36
Bra037289.1-P	Field mustard	cytosol	52.68	52.3
CDY47479	Canola	cytosol	52.68	52.17
CDY26787	Canola	cytosol	52.68	52.17
Os03t0640100-01	Rice	cytosol	53.9	51.64
Bra001997.1-P	Field mustard	nucleus	52.44	51.44
AT2G16780.1	Thale cress	cytosol	51.22	50.6
AT4G35050.1	Thale cress	cytosol	51.71	50.0
CDY70131	Canola	cytosol	23.66	46.41
Os12t0132400-01	Rice	nucleus	10.0	26.8
Os01t0710000-01	Rice	nucleus	29.02	26.27
Os02t0245100-01	Rice	cytosol, golgi, plastid	18.54	23.6
Os11t0134500-01	Rice	nucleus	25.61	22.58
Os12t0132300-02	Rice	cytosol	0.98	2.19
Os11t0134400-00	Rice	cytosol	0.98	2.19

Protein Annotations

MapMan:12.2.1.3	Gene3D:2.130.10.10	EntrezGene:4347727	EMBL:AK101798	EMBL:AK103397	ProteinID:BAD46577.1
ProteinID:BAF25724.1	ProteinID:BAT09196.1	ProteinID:EAZ45518.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Histone-bd_RBBP4_N
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os09g0540600	EnsemblPlants:Os09t0540600-01	PFAM:PF00400
PFAM:PF12265	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850
PANTHER:PTHR22850:SF137	UniProt:Q651E0	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00003FF57B	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015612432.1	SEG:seg

Description

Mediator 4_1Similar to WD-40 repeat protein MSI1. (Os09t0540600-01)

Coordinates

chr9:+:21276447..21280591

Molecular Weight (calculated)

44744.1 Da

IEP (calculated)

4.792

GRAVY (calculated)

-0.363

Length

410 amino acids

Sequence
(BLAST)

001: MDGGSSTAAR SSAAEMEEHQ NWKKNAPVLY DLVISQPLEW PSLTVQWLPS HSRSPGSARS HRLVLGTHTS DETPNHLLLA DAALPLPPRL AAAAAAAGGA
101: VPAPSVSISR SVPHKGEVNR ARCMPQRPYT VATKTCVDEV HVYHLGDGGE KGGADVVLRG HEAEGYGLAW SPMKEGLLLS GSYDKKICLW DLAAGSGASS
201: LDAHHVFEAH DDVVEDVAWH LKDENLFGSA GDDCKLMMWD LRTNKPGQSI VAHQKEVNSL SFNPFNEWIL ASASGDATIK LFDLRKLSRS LHVFDSHDSC
301: RGEVFQVEWN PNLETVLASS AADKRVMIWD VSRIGDEQAE EDANDGPPEL LFVHGGHTAK ISELSWNPTQ KWVMASVAED NILQIWEMAE SIYCDDNYLH
401: DNDDDSCPAT

Best Arabidopsis Sequence Match ( AT5G58230.1 )
(BLAST)

001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS

Arabidopsis Description

MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.