Factsheet for Os03t0640100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0140500-01
Os01t0201700-02
Os01t0761100-01
Os01t0823300-00
Os01t0886200-01
Os02t0132200-00
Os02t0214900-01
Os02t0215200-02
Os02t0622300-00
Os03t0234600-00
Os03t0307800-01
Os03t0356300-01
Os03t0751400-01
Os03t0804800-01
Os03t0807800-01
Os03t0816200-01
Os04t0162100-01
Os04t0515300-02
Os04t0551800-01
Os05t0203800-02
Os05t0477300-03
Os06t0583400-01
Os07t0207400-01
Os08t0137100-01
Os08t0137250-01
Os09t0306800-01
Os11t0151300-01
Os12t0150100-01
Os12t0207000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58230.1	Os03t0307800-01	AT1G02580.1	12970192
AT5G58230.1	Os03t0356300-01	AT1G05190.1	23778966
AT5G58230.1	Os03t0751400-01	AT1G05190.1	23778966
AT5G58230.1	Os03t0234600-00	AT2G32840.1	23778966
AT5G58230.1	Os02t0132200-00	AT2G40630.1	23778966
AT5G58230.1	Os03t0807800-01	AT2G41840.1	23778966
AT5G58230.1	Os07t0207400-01	AT2G41840.1	23778966
AT5G58230.1	Os03t0804800-01	AT3G03960.1	23778966
AT5G58230.1	Os04t0551800-01	AT3G20050.1	23778966
AT5G58230.1	Os08t0137100-01	AT3G20740.1	12970192
AT5G58230.1	Os08t0137250-01	AT3G20740.1	12970192
AT5G58230.1	Os08t0137100-01	AT3G20740.1	18812497
AT5G58230.1	Os08t0137250-01	AT3G20740.1	18812497
AT5G58230.1	Os08t0137100-01	AT3G20740.1	23778966
AT5G58230.1	Os08t0137250-01	AT3G20740.1	23778966
AT5G58230.1	Os01t0140500-01	AT3G49910.1	23778966
AT5G58230.1	Os11t0151300-01	AT3G49910.1	23778966
AT5G58230.1	Os12t0150100-01	AT3G49910.1	23778966
AT5G58230.1	Os01t0823300-00	AT3G56340.1	23778966
AT5G58230.1	Os03t0816200-01	AT3G56340.1	23778966
AT5G58230.1	Os05t0477300-03	AT3G56340.1	23778966
AT5G58230.1	Os03t0307800-01	AT4G02020.1	23778966
AT5G58230.1	Os04t0162100-01	AT4G16845.1	23778966
AT5G58230.1	Os09t0306800-01	AT4G16845.1	23778966
AT5G58230.1	Os01t0201700-02	AT4G18960.1	23778966
AT5G58230.1	Os01t0886200-01	AT4G18960.1	23778966
AT5G58230.1	Os05t0203800-02	AT4G18960.1	23778966
AT5G58230.1	Os12t0207000-01	AT4G18960.1	23778966
AT5G58230.1	Os02t0622300-00	AT4G27090.1	23778966
AT5G58230.1	Os04t0515300-02	AT4G27090.1	23778966
AT5G58230.1	Os01t0761100-01	AT4G29000.1	23778966
AT5G58230.1	Os02t0214900-01	AT4G38130.1	23778966
AT5G58230.1	Os02t0215200-02	AT4G38130.1	23778966
AT5G58230.1	Os06t0583400-01	AT4G38130.1	23778966
AT5G58230.1	Os04t0162100-01	AT5G51230.1	23778966
AT5G58230.1	Os09t0306800-01	AT5G51230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G385600.1	Wheat	nucleus	95.33	95.33
TraesCS5B01G378700.1	Wheat	nucleus	95.09	95.09
TraesCSU01G072700.1	Wheat	nucleus	94.86	94.86
Zm00001d033248_P002	Maize	cytoskeleton, cytosol, nucleus	94.86	94.2
Zm00001d033247_P001	Maize	nucleus	94.39	93.74
TraesCS5D01G385800.1	Wheat	cytosol	47.43	91.03
GSMUA_Achr4P31680_001	Banana	nucleus	87.38	88.42
Zm00001d013702_P001	Maize	nucleus	88.78	88.17
PGSC0003DMT400061016	Potato	cytosol	86.22	87.03
VIT_16s0013g01550.t01	Wine grape	nucleus	86.22	87.03
Solyc01g104510.2.1	Tomato	nucleus	85.75	86.56
AT5G58230.1	Thale cress	nucleus	85.51	86.32
KRH42369	Soybean	nucleus	85.51	86.12
KRH58491	Soybean	nucleus	85.05	85.65
CDY02805	Canola	nucleus	77.57	79.24
CDY43875	Canola	nucleus	78.04	78.4
Bra002667.1-P	Field mustard	nucleus	76.64	77.0
CDY62688	Canola	nucleus	76.64	77.0
GSMUA_Achr5P02390_001	Banana	cytosol	74.3	75.71
CDY32715	Canola	nucleus	73.13	75.24
Bra020379.1-P	Field mustard	cytosol	73.13	75.24
OQU91278	Sorghum	cytosol, nucleus, plastid	94.63	66.61
CDY58569	Canola	cytosol	83.41	56.13
CDX88663	Canola	nucleus	83.41	56.13
Os09t0540600-01	Rice	cytosol	51.64	53.9
Os01t0710000-01	Rice	nucleus	32.71	30.91
Os12t0132400-01	Rice	nucleus	9.35	26.14
Os02t0245100-01	Rice	cytosol, golgi, plastid	17.52	23.29
Os11t0134500-01	Rice	nucleus	25.23	23.23
Os11t0134400-00	Rice	cytosol	0.93	2.19
Os12t0132300-02	Rice	cytosol	0.93	2.19

Protein Annotations

MapMan:12.2.1.3	MapMan:12.3.3.1.1.1	Gene3D:2.130.10.10	EntrezGene:4333540	ProteinID:AAT85286.1	ProteinID:ABF97823.1
EMBL:AK059114	ProteinID:BAF12655.1	ProteinID:BAS85423.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005677	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006310	GO:GO:0006325	GO:GO:0006349	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950
GO:GO:0006974	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009555	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987	GO:GO:0010026	GO:GO:0010214
GO:GO:0016043	GO:GO:0030154	GO:GO:0031507	GO:GO:0040029	GO:GO:0045787	GO:GO:0048316
GO:GO:0048366	GO:GO:0070828	GO:GO:2000653	InterPro:Histone-bd_RBBP4_N	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlantsGene:Os03g0640100	EnsemblPlants:Os03t0640100-01	PFAM:PF00400	PFAM:PF12265	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22850	PANTHER:PTHR22850:SF82	UniProt:Q10G81
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0000DB4A9E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015632366.1	SEG:seg	:	:

Description

OsWD40-79, OsMSI1Similar to WD-40 repeat protein MSI1. (Os03t0640100-01)

Coordinates

chr3:-:24621460..24629502

Molecular Weight (calculated)

48362.3 Da

IEP (calculated)

4.538

GRAVY (calculated)

-0.490

Length

428 amino acids

Sequence
(BLAST)

001: MPKATAAEEE EFRAEVEERL INEEYKIWKK NTPFLYDLVI THALEWPSLT VQWLPDRAEP AGKDHSVQKM VLGTHTSDNE PNYLMLAQVQ LPLDDAEADA
101: RHYDDDHAEI GGFGAASGKV QIVQQINHDG EVNRARYMPQ NSFIIATKTV SAEVYVFDYS KHPSKPPLDG ACNPDLRLKG HNSEGYGLSW SIFKEGHLLS
201: GSDDAQICLW DIKANSKNKT LDALQIFKYH DGVVEDVAWH LRHEYLFGSV GDDHNLLIWD LRSPVSTKPV QSVAAHQGEV NCLAFNPFNE WVVATGSTDK
301: TVKLFDLRKI DTSLHTFDCH KEEVFQVGWS PKNETILASC CLGRRLMVWD LSRIDQEQTP EDAEDGPPEL LFIHGGHTSK ISDFSWNPCE DWVIASVAED
401: NILQIWQMAE NIYHDEDDVP TDDPAKAP

Best Arabidopsis Sequence Match ( AT5G58230.1 )
(BLAST)

001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS

Arabidopsis Description

MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.