Factsheet for Os08t0137100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0307800-01
Os03t0640100-01
Os06t0275500-01
Os08t0538700-01
Os11t0533500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20740.1	Os03t0307800-01	AT1G02580.1	10962025
AT3G20740.1	Os03t0307800-01	AT1G02580.1	11114524
AT3G20740.1	Os03t0307800-01	AT1G02580.1	11148284
AT3G20740.1	Os03t0307800-01	AT1G02580.1	12970192
AT3G20740.1	Os03t0307800-01	AT1G02580.1	15456723
AT3G20740.1	Os03t0307800-01	AT1G02580.1	15469499
AT3G20740.1	Os03t0307800-01	AT1G02580.1	18812497
AT3G20740.1	Os06t0275500-01	AT2G23380.1	14871310
AT3G20740.1	Os06t0275500-01	AT2G23380.1	15456723
AT3G20740.1	Os06t0275500-01	AT2G23380.1	18812497
AT3G20740.1	Os08t0538700-01	AT3G12280.1	15221456
AT3G20740.1	Os11t0533500-01	AT3G12280.1	15221456
AT3G20740.1	Os08t0538700-01	AT3G12280.1	18812497
AT3G20740.1	Os11t0533500-01	AT3G12280.1	18812497
AT3G20740.1	Os03t0307800-01	AT4G02020.1	15456723
AT3G20740.1	Os03t0640100-01	AT5G58230.1	12970192
AT3G20740.1	Os03t0640100-01	AT5G58230.1	18812497

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024698_P002	Maize	cytosol	88.56	87.86
GSMUA_Achr5P26370_001	Banana	cytosol	80.32	82.07
VIT_19s0014g05210.t01	Wine grape	plastid	78.19	79.46
KRH31935	Soybean	cytosol	76.86	75.65
KRH71526	Soybean	cytosol	76.06	75.07
Solyc07g064090.2.1	Tomato	nucleus	73.94	74.73
TraesCS7A01G089100.1	Wheat	cytosol	75.27	74.67
TraesCS4A01G388400.1	Wheat	cytosol, plastid	75.0	74.6
PGSC0003DMT400049479	Potato	cytosol	73.67	74.46
AT3G20740.1	Thale cress	cytosol	67.55	68.83
TraesCS7A01G308300.1	Wheat	nucleus, plastid	86.17	68.5
KRH27099	Soybean	cytosol, mitochondrion, nucleus	40.96	68.44
KRH22237	Soybean	cytosol	69.95	68.31
HORVU7Hr1G073410.1	Barley	cytosol	86.17	68.07
OQU79846	Sorghum	plastid	88.56	67.68
CDY53612	Canola	plastid	65.96	67.21
TraesCS7D01G305100.1	Wheat	nucleus, plastid	86.44	67.01
CDY27567	Canola	plastid	65.69	66.94
TraesCS7D01G084500.1	Wheat	plastid	74.2	61.32
TraesCS7A01G089200.1	Wheat	cytoskeleton, cytosol, nucleus, plastid	73.94	61.1
CDY19607	Canola	cytosol, nucleus, plastid	61.97	59.14
CDY19611	Canola	plastid	59.31	58.68
CDY06378	Canola	mitochondrion	41.76	58.36
Os08t0137250-01	Rice	cytosol	71.28	57.51
EES13318	Sorghum	mitochondrion	67.82	56.79
CDY56255	Canola	cytosol	59.31	56.74
Zm00001d049608_P001	Maize	mitochondrion	67.82	55.31
CDY68274	Canola	cytosol, nucleus	29.79	54.9
CDY19610	Canola	cytoskeleton, cytosol, nucleus	39.63	50.0
Bra041121.1-P	Field mustard	cytosol	6.91	36.62
CDY10986	Canola	extracellular	12.5	22.82

Protein Annotations

MapMan:12.3.3.1.1.2	Gene3D:2.130.10.10	EntrezGene:4344620	EMBL:AK111761	ProteinID:BAD03073.1	ProteinID:BAF22867.1
ProteinID:BAT03750.1	ProteinID:EEE68010.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005677	GO:GO:0006139	GO:GO:0006325	GO:GO:0006342	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791
GO:GO:0009960	GO:GO:0009987	GO:GO:0010231	GO:GO:0016043	GO:GO:0016571	GO:GO:0019538
GO:GO:0030154	GO:GO:0031519	GO:GO:0035098	GO:GO:0040029	GO:GO:0070734	GO:GO:0090696
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os08g0137100	EnsemblPlants:Os08t0137100-01	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10253	PANTHER:PTHR10253:SF5
InterPro:Polycomb_EED	UniProt:Q6ZJX0	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0000225FE2	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015649884.1	RefSeq:XP_015649885.1

Description

FERTILIZATION-INDEPENDENT ENDOSPERM 2WD40 Polycomb protein of the PRC2 complex, Regulation of vegetative and reproductive development (Os08t0137100-01)

Coordinates

chr8:+:2077234..2083272

Molecular Weight (calculated)

42038.1 Da

IEP (calculated)

5.882

GRAVY (calculated)

-0.107

Length

376 amino acids

Sequence
(BLAST)

001: MAKLGPGQGL GCEAAVGLLA PSRKREYKAC NKLTEGKRPL YAIGFNFLDF HYYEVFATVG GNRVTTYSCL KDGNFAILQA YIDEDKDESF YTLSWACDLD
101: GTPLLVAAGS NGIIRVINCA TEKLLKTFVG HGDSINEIRT QALKPSLIIS ASKDESVRLW NVHTGICILI FAGAGGHRNE VLSVDFHPSD IYRIASCGMD
201: NTVKIWSMKE FWPYVEQSFT WTDLPSKFPT KYVQFPVLVA VVHSNYVDCT RWLGDFILSK SVDNEIVLWE PKTKEQSPGE GSIDILQKYP VPECDIWFIK
301: FSCDFHFNQL AIGNREGKVF VWEVQSSPPV LTARLTNPQC KSAIRQTAVS FDGSTILACS EDGSIWRWDE VDHPKA

Best Arabidopsis Sequence Match ( AT3G20740.1 )
(BLAST)

001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK

Arabidopsis Description

FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.