CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19611	Canola	plastid	91.35	94.47
CDY53612	Canola	plastid	76.34	81.3
CDY27567	Canola	plastid	76.08	81.03
CDY19607	Canola	cytosol, nucleus, plastid	78.63	78.43
CDY06378	Canola	mitochondrion	52.42	76.58
CDY68274	Canola	cytosol, nucleus	36.13	69.61
VIT_19s0014g05210.t01	Wine grape	plastid	61.32	65.14
Solyc07g064090.2.1	Tomato	nucleus	60.31	63.71
PGSC0003DMT400049479	Potato	cytosol	60.05	63.44
KRH31935	Soybean	cytosol	60.81	62.57
GSMUA_Achr5P26370_001	Banana	cytosol	58.27	62.23
KRH71526	Soybean	cytosol	60.31	62.2
Zm00001d024698_P002	Maize	cytosol	57.51	59.63
KRH22237	Soybean	cytosol	58.27	59.48
Os08t0137100-01	Rice	cytosol	56.74	59.31
CDY19610	Canola	cytoskeleton, cytosol, nucleus	44.27	58.39
KRH27099	Soybean	cytosol, mitochondrion, nucleus	32.82	57.33
TraesCS4A01G388400.1	Wheat	cytosol, plastid	51.4	53.44
TraesCS7A01G089100.1	Wheat	cytosol	51.4	53.3
TraesCS7A01G308300.1	Wheat	nucleus, plastid	56.23	46.72
HORVU7Hr1G073410.1	Barley	cytosol	55.73	46.01
OQU79846	Sorghum	plastid	57.51	45.94
TraesCS7D01G305100.1	Wheat	nucleus, plastid	56.23	45.57
Os08t0137250-01	Rice	cytosol	52.42	44.21
TraesCS7A01G089200.1	Wheat	cytoskeleton, cytosol, nucleus, plastid	51.15	44.18
TraesCS7D01G084500.1	Wheat	plastid	50.89	43.96
EES13318	Sorghum	mitochondrion	49.36	43.21
Zm00001d049608_P001	Maize	mitochondrion	50.13	42.73
CDY10986	Canola	extracellular	11.2	21.36

Protein Annotations

MapMan:12.3.3.1.1.2	Gene3D:2.130.10.10	UniProt:A0A078J2D6	EnsemblPlants:CDY56255	ProteinID:CDY56255	ProteinID:CDY56255.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0019538	GO:GO:0035098	EnsemblPlantsGene:GSBRNA2T00018015001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10253	PANTHER:PTHR10253:SF5	InterPro:Polycomb_EED	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0004EEC3FF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

BnaCnng29960DBnaCnng29960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2D6]

Coordinates

chrLK033472:+:3486..6206

Molecular Weight (calculated)

44264.8 Da

IEP (calculated)

7.976

GRAVY (calculated)

-0.201

Length

393 amino acids

Sequence
(BLAST)

001: MRLVSLDKSS VREREKRFGM SKIALGNESL VGSLTPSNKK SYKLTNRIQE GRIPLYSVVF NSIDARFFNC FVSAGGNGIN LYNCLEDGGI SSLHSYTDED
101: NEESFYTVSW ACGVEGNPFV AAGGVKGIIR VLNVKEKMVH KTLVGHGDSV NEIKTHHMKP QLVLSASKDE SVRLWNVETG ICILIFAGTS GHRYEVVSVD
201: FHPHDKHRFV SCGMDTTIKI WSMKEFWTYV DKSFTWKDDP SKFPTKFVQF PVFTTSVHTN YVDCNRWFGD FILSKSVENE ILLWEPQLKD NSPGEGTSDV
301: LLRYPIPNCN LWFIKFSCDL SLNYLSIGNH KGKIYVWDLK SCPPVLVTVL KHSLSKSVIR QTAMSTNGNT ILAASEDGTI WRWDAVTKVA ESL

Best Arabidopsis Sequence Match ( AT3G20740.1 )
(BLAST)

001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK

Arabidopsis Description

FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.