CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035748.1-P	Field mustard	cytosol, nucleus, plastid	85.13	60.42
CDY19607	Canola	cytosol, nucleus, plastid	85.13	58.12
CDY27567	Canola	plastid	75.84	55.28
CDY53612	Canola	plastid	75.46	55.01
CDY19611	Canola	plastid	77.7	55.0
CDY68274	Canola	cytosol, nucleus	40.52	53.43
CDY56255	Canola	cytosol	76.58	52.42
KRH27099	Soybean	cytosol, mitochondrion, nucleus	40.15	48.0
VIT_19s0014g05210.t01	Wine grape	plastid	64.68	47.03
PGSC0003DMT400049479	Potato	cytosol	63.94	46.24
Solyc07g064090.2.1	Tomato	nucleus	63.57	45.97
GSMUA_Achr5P26370_001	Banana	cytosol	61.71	45.11
KRH31935	Soybean	cytosol	63.2	44.5
KRH71526	Soybean	cytosol	62.45	44.09
Zm00001d024698_P002	Maize	cytosol	59.48	42.22
Os08t0137100-01	Rice	cytosol	58.36	41.76
KRH22237	Soybean	cytosol	59.48	41.56
TraesCS7A01G089100.1	Wheat	cytosol	56.51	40.11
TraesCS4A01G388400.1	Wheat	cytosol, plastid	56.13	39.95
CDY19610	Canola	cytoskeleton, cytosol, nucleus	41.26	37.25
TraesCS7A01G089200.1	Wheat	cytoskeleton, cytosol, nucleus, plastid	56.51	33.41
TraesCS7A01G308300.1	Wheat	nucleus, plastid	58.36	33.19
TraesCS7D01G084500.1	Wheat	plastid	55.76	32.97
HORVU7Hr1G073410.1	Barley	cytosol	57.62	32.56
OQU79846	Sorghum	plastid	59.48	32.52
TraesCS7D01G305100.1	Wheat	nucleus, plastid	58.36	32.37
EES13318	Sorghum	mitochondrion	52.79	31.63
Os08t0137250-01	Rice	cytosol	53.53	30.9
Zm00001d049608_P001	Maize	mitochondrion	51.67	30.15
CDY10986	Canola	extracellular	11.15	14.56

Protein Annotations

MapMan:12.3.3.1.1.2	Gene3D:2.130.10.10	EnsemblPlants:CDY06378	ProteinID:CDY06378	ProteinID:CDY06378.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016571	GO:GO:0019538	GO:GO:0035098	EnsemblPlantsGene:GSBRNA2T00122332001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10253
PANTHER:PTHR10253:SF5	InterPro:Polycomb_EED	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EF1158	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

BnaC05g31520D

Coordinates

chrLK031969:-:87741..90537

Molecular Weight (calculated)

30888.0 Da

IEP (calculated)

5.915

GRAVY (calculated)

-0.148

Length

269 amino acids

Sequence
(BLAST)

001: MSKITLGNKS LVGSLTPSNK KLYKLTNKIQ EGKIPLYSVA FNFIDARFFT CFVSAGGNGI NLYNCLEDGS IFSLYAFADE DKEEEPIFID VNNQKIHKSL
101: VGHGDLVNKI RTQPLKPQLV LSASKDESVR LWNVETGICI LIFAGTEGHR YEVVSVDFHP LDEHRFISCG LDTTIKIWSM KEFWTYVEKS FTWKDDPSKF
201: PTKFVELPVF TASVHTDFVD CNRWVGDFIL SKSVENEILL WEPILKENFP EEVRISFYTI HNRDIQLIK

Best Arabidopsis Sequence Match ( AT3G20740.1 )
(BLAST)

001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK

Arabidopsis Description

FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.