Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH71526 | Soybean | cytosol | 97.12 | 97.38 |
VIT_19s0014g05210.t01 | Wine grape | plastid | 85.34 | 88.11 |
PGSC0003DMT400049479 | Potato | cytosol | 82.98 | 85.22 |
Solyc07g064090.2.1 | Tomato | nucleus | 82.72 | 84.95 |
GSMUA_Achr5P26370_001 | Banana | cytosol | 81.41 | 84.51 |
KRH22237 | Soybean | cytosol | 80.89 | 80.26 |
KRH27099 | Soybean | cytosol, mitochondrion, nucleus | 46.07 | 78.22 |
Os08t0137100-01 | Rice | cytosol | 75.65 | 76.86 |
Zm00001d024698_P002 | Maize | cytosol | 74.61 | 75.2 |
AT3G20740.1 | Thale cress | cytosol | 71.2 | 73.71 |
CDY53612 | Canola | plastid | 70.68 | 73.17 |
CDY27567 | Canola | plastid | 70.42 | 72.9 |
TraesCS7A01G089100.1 | Wheat | cytosol | 64.14 | 64.64 |
TraesCS4A01G388400.1 | Wheat | cytosol, plastid | 63.09 | 63.76 |
CDY19611 | Canola | plastid | 63.09 | 63.42 |
CDY06378 | Canola | mitochondrion | 44.5 | 63.2 |
CDY19607 | Canola | cytosol, nucleus, plastid | 64.4 | 62.44 |
CDY56255 | Canola | cytosol | 62.57 | 60.81 |
CDY68274 | Canola | cytosol, nucleus | 31.68 | 59.31 |
TraesCS7A01G308300.1 | Wheat | nucleus, plastid | 72.51 | 58.56 |
HORVU7Hr1G073410.1 | Barley | cytosol | 72.25 | 57.98 |
TraesCS7D01G305100.1 | Wheat | nucleus, plastid | 73.04 | 57.53 |
OQU79846 | Sorghum | plastid | 74.08 | 57.52 |
TraesCS7A01G089200.1 | Wheat | cytoskeleton, cytosol, nucleus, plastid | 63.35 | 53.19 |
CDY19610 | Canola | cytoskeleton, cytosol, nucleus | 40.84 | 52.35 |
TraesCS7D01G084500.1 | Wheat | plastid | 62.3 | 52.31 |
EES13318 | Sorghum | mitochondrion | 61.26 | 52.12 |
Os08t0137250-01 | Rice | cytosol | 61.26 | 50.21 |
Zm00001d049608_P001 | Maize | mitochondrion | 59.42 | 49.24 |
CDY10986 | Canola | extracellular | 11.78 | 21.84 |
Protein Annotations
EntrezGene:100127417 | MapMan:12.3.3.1.1.2 | Gene3D:2.130.10.10 | EMBL:ACUP02006091 | InterPro:G-protein_beta_WD-40_rep | EnsemblPlantsGene:GLYMA_10G022000 |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
GO:GO:0016043 | GO:GO:0016571 | GO:GO:0019538 | GO:GO:0035098 | UniProt:I1L7Y7 | InterPro:IPR001680 |
InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlants:KRH31935 | ProteinID:KRH31935 | ProteinID:KRH31935.1 | ProteinID:KRH31936.1 |
PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR10253 |
PANTHER:PTHR10253:SF5 | InterPro:Polycomb_EED | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI00023C9A22 | InterPro:WD40/YVTN_repeat-like_dom_sf |
InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : |
Description
hypothetical protein
Coordinates
chr10:-:1919552..1926140
Molecular Weight (calculated)
42631.6 Da
IEP (calculated)
5.881
GRAVY (calculated)
-0.095
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGETAATGK SVGLGLGCDP VVGSLACSKK REYRVTNRLQ EGKRPLYAVI FNFIDSRYFN VFATVGGNRV TVYQCLEGGV IAVLQSYVDE DKDESFYTVS
101: WACNVDGTPF VVAGGINGVM RVIDVGSEKI HKSFVGHGDS VNEIRTQTLK PSLVISASKD ESVRLWNVHT GICILIFAGA GGHRNEVLSV DFHPSDIYRI
201: ASCGMDNTVK IWSMKEFWTY VEKSFTWTDL PSKFPTKYVQ FPVYNASVHL NYVDCNRWLG DFILSKSVDN EIILWEPKVK EQTPGEGVVD ILQKYPVPEC
301: DIWFIKFSCD FHFNLAAVGN REGKIFVWEL QSSPPVLVAR LSHPQSKSPI RQTATSFDGS TILSCCEDGT IWRWDDVTNS PD
101: WACNVDGTPF VVAGGINGVM RVIDVGSEKI HKSFVGHGDS VNEIRTQTLK PSLVISASKD ESVRLWNVHT GICILIFAGA GGHRNEVLSV DFHPSDIYRI
201: ASCGMDNTVK IWSMKEFWTY VEKSFTWTDL PSKFPTKYVQ FPVYNASVHL NYVDCNRWLG DFILSKSVDN EIILWEPKVK EQTPGEGVVD ILQKYPVPEC
301: DIWFIKFSCD FHFNLAAVGN REGKIFVWEL QSSPPVLVAR LSHPQSKSPI RQTATSFDGS TILSCCEDGT IWRWDDVTNS PD
001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
Arabidopsis Description
FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.