Factsheet for Solyc07g064090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g079390.2.1
Solyc01g104510.2.1
Solyc03g044380.2.1
Solyc09g091280.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20740.1	Solyc03g044380.2.1	AT2G23380.1	14871310
AT3G20740.1	Solyc03g044380.2.1	AT2G23380.1	15456723
AT3G20740.1	Solyc03g044380.2.1	AT2G23380.1	18812497
AT3G20740.1	Solyc09g091280.2.1	AT3G12280.1	15221456
AT3G20740.1	Solyc09g091280.2.1	AT3G12280.1	18812497
AT3G20740.1	Solyc01g079390.2.1	AT4G02020.1	15456723
AT3G20740.1	Solyc01g104510.2.1	AT5G58230.1	12970192
AT3G20740.1	Solyc01g104510.2.1	AT5G58230.1	18812497

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049479	Potato	cytosol	99.19	99.19
VIT_19s0014g05210.t01	Wine grape	plastid	86.56	87.03
KRH71526	Soybean	cytosol	85.48	83.46
KRH31935	Soybean	cytosol	84.95	82.72
GSMUA_Achr5P26370_001	Banana	cytosol	80.65	81.52
KRH22237	Soybean	cytosol	77.42	74.81
Os08t0137100-01	Rice	cytosol	74.73	73.94
CDY53612	Canola	plastid	72.85	73.44
Zm00001d024698_P002	Maize	cytosol	74.73	73.35
CDY27567	Canola	plastid	72.58	73.17
AT3G20740.1	Thale cress	cytosol	72.31	72.9
TraesCS7A01G089100.1	Wheat	cytosol	65.59	64.38
TraesCS4A01G388400.1	Wheat	cytosol, plastid	65.05	64.02
CDY06378	Canola	mitochondrion	45.97	63.57
CDY19611	Canola	plastid	63.98	62.63
CDY19607	Canola	cytosol, nucleus, plastid	65.32	61.68
CDY56255	Canola	cytosol	63.71	60.31
CDY68274	Canola	cytosol, nucleus	32.8	59.8
HORVU7Hr1G073410.1	Barley	cytosol	74.46	58.19
TraesCS7A01G308300.1	Wheat	nucleus, plastid	73.66	57.93
TraesCS7D01G305100.1	Wheat	nucleus, plastid	73.92	56.7
OQU79846	Sorghum	plastid	74.73	56.5
TraesCS7A01G089200.1	Wheat	cytoskeleton, cytosol, nucleus, plastid	64.78	52.97
TraesCS7D01G084500.1	Wheat	plastid	64.52	52.75
Os08t0137250-01	Rice	cytosol	63.17	50.43
EES13318	Sorghum	mitochondrion	59.95	49.67
Zm00001d049608_P001	Maize	mitochondrion	60.48	48.81
CDY19610	Canola	cytoskeleton, cytosol, nucleus	38.71	48.32
Bra041121.1-P	Field mustard	cytosol	7.8	40.85
CDY10986	Canola	extracellular	12.9	23.3

Protein Annotations

MapMan:12.3.3.1.1.2	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005677	GO:GO:0006139	GO:GO:0006349	GO:GO:0006464	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009409	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987
GO:GO:0016043	GO:GO:0016571	GO:GO:0019538	GO:GO:0035098	GO:GO:0040029	GO:GO:0043078
GO:GO:2000014	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4CH92	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10253	PANTHER:PTHR10253:SF5
InterPro:Polycomb_EED	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc07g064090.2	EnsemblPlants:Solyc07g064090.2.1	UniParc:UPI000276C22C
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:Projected from Arabidopsis thaliana (AT3G20740) UniProtKB/Swiss-Prot;Acc:Q9LT47]

Coordinates

chr7:-:66374884..66380061

Molecular Weight (calculated)

41868.0 Da

IEP (calculated)

6.918

GRAVY (calculated)

-0.124

Length

372 amino acids

Sequence
(BLAST)

001: MAARVPLGCE PVVGSLTPSR KKEYRVTNRL QEGKRPLYGV VFNFIDSRYF NVFATVGGNR VTVYQCLEGG VIAVLQSYID EDKDESFYTV SWACNIDGSP
101: FLVAGGINGV IRVIDAGKEK LHKSFVGHGD SVNEIRTQPL KPSLVLSASK DESVRLWNVH TGICILVFAG AGGHRNEVLS VDFHPTDIYR IASCGMDNTV
201: KIWSMKEFWT YVEKSFTWTD LPSKFPTKYV QFPLLIASVH NNYVDCNRWL GDFILSKSVD NEILLWEPKM KEQSAGEGTS DVLQKYPVPE CDIWFIKLSF
301: DYHYKTAAIG NREGKIFVWE VQTSPPTLIA KLSHVQSKQP IRQTAMSFDG STILSCCEDG TIWRWDVVAT TF

Best Arabidopsis Sequence Match ( AT3G20740.1 )
(BLAST)

001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK

Arabidopsis Description

FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.