CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035750.1-P	Field mustard	cytoskeleton, cytosol, nucleus	100.0	100.0
CDY68274	Canola	cytosol, nucleus	48.99	71.57
CDY53612	Canola	plastid	56.71	45.8
CDY19611	Canola	plastid	58.39	45.79
CDY27567	Canola	plastid	56.38	45.53
CDY19607	Canola	cytosol, nucleus, plastid	59.4	44.92
CDY56255	Canola	cytosol	58.39	44.27
CDY06378	Canola	mitochondrion	37.25	41.26
KRH31935	Soybean	cytosol	52.35	40.84
GSMUA_Achr5P26370_001	Banana	cytosol	50.0	40.49
KRH71526	Soybean	cytosol	51.34	40.16
VIT_19s0014g05210.t01	Wine grape	plastid	49.66	40.0
Os08t0137100-01	Rice	cytosol	50.0	39.63
Zm00001d024698_P002	Maize	cytosol	49.33	38.79
Solyc07g064090.2.1	Tomato	nucleus	48.32	38.71
PGSC0003DMT400049479	Potato	cytosol	48.32	38.71
KRH22237	Soybean	cytosol	48.99	37.92
KRH27099	Soybean	cytosol, mitochondrion, nucleus	28.19	37.33
TraesCS7A01G089100.1	Wheat	cytosol	46.64	36.68
TraesCS4A01G388400.1	Wheat	cytosol, plastid	45.97	36.24
TraesCS7A01G308300.1	Wheat	nucleus, plastid	48.99	30.87
TraesCS7D01G084500.1	Wheat	plastid	46.98	30.77
TraesCS7A01G089200.1	Wheat	cytoskeleton, cytosol, nucleus, plastid	46.31	30.33
HORVU7Hr1G073410.1	Barley	cytosol	48.32	30.25
TraesCS7D01G305100.1	Wheat	nucleus, plastid	48.99	30.1
EES13318	Sorghum	mitochondrion	45.3	30.07
OQU79846	Sorghum	plastid	49.33	29.88
Zm00001d049608_P001	Maize	mitochondrion	43.96	28.42
Os08t0137250-01	Rice	cytosol	44.3	28.33
CDY10986	Canola	extracellular	9.4	13.59

Protein Annotations

MapMan:12.3.3.1.1.2	Gene3D:2.130.10.10	UniProt:A0A078FZ40	EnsemblPlants:CDY19610	ProteinID:CDY19610	ProteinID:CDY19610.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016571	GO:GO:0019538	GO:GO:0035098	EnsemblPlantsGene:GSBRNA2T00009277001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR10253	PANTHER:PTHR10253:SF5	InterPro:Polycomb_EED	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002547A04
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

BnaA05g20180DBnaA05g20180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZ40]

Coordinates

chrLK032098:+:508174..510536

Molecular Weight (calculated)

33575.3 Da

IEP (calculated)

5.898

GRAVY (calculated)

-0.071

Length

298 amino acids

Sequence
(BLAST)

001: MLHMSMCFGD QEESFYTASW ACDVERNPFV VAGGFNGRIR VINVNDKIVH KTLVGHEGPV NEIRTHPMKP QLVISASKDG SVRLWNIETG ICILIFAGTG
101: GHRSEVLSVD FHASDMSRFV SCDMEATTKI WSLTESWKYV EMSFTWKDDP KTFPTQVVQF PVFTASDRSN LLNCNRWYGY NILSKGDACD IRLWQPQLKE
201: NSPGEGDFYV RLVYAIPDSY HRIIKFSCDL SMKFVSVGND KGDIYVWDLK SFPPVLVTVS LDLAIPFPPS IIDSPTLIIM IRDRSDDLGK LPAGTVSI

Best Arabidopsis Sequence Match ( AT3G20740.1 )
(BLAST)

001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK

Arabidopsis Description

FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.