Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19610 | Canola | cytoskeleton, cytosol, nucleus | 100.0 | 100.0 |
| Bra035751.1-P | Field mustard | plastid | 59.06 | 46.44 |
| Bra023933.1-P | Field mustard | plastid | 56.71 | 45.8 |
| Bra035748.1-P | Field mustard | cytosol, nucleus, plastid | 54.36 | 42.74 |
| Bra041121.1-P | Field mustard | cytosol | 2.35 | 9.86 |
Protein Annotations
| MapMan:12.3.3.1.1.2 | Gene3D:2.130.10.10 | EnsemblPlantsGene:Bra035750 | EnsemblPlants:Bra035750.1 | EnsemblPlants:Bra035750.1-P | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016571 | GO:GO:0019538 | GO:GO:0035098 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| UniProt:M4F3V0 | PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR10253 |
| PANTHER:PTHR10253:SF5 | InterPro:Polycomb_EED | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0002547A04 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : |
Description
AT3G20740 (E=2e-094) FIE, FIS3, FIE1 | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator
Coordinates
chrA05:+:16946942..16949306
Molecular Weight (calculated)
33575.3 Da
IEP (calculated)
5.898
GRAVY (calculated)
-0.071
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MLHMSMCFGD QEESFYTASW ACDVERNPFV VAGGFNGRIR VINVNDKIVH KTLVGHEGPV NEIRTHPMKP QLVISASKDG SVRLWNIETG ICILIFAGTG
101: GHRSEVLSVD FHASDMSRFV SCDMEATTKI WSLTESWKYV EMSFTWKDDP KTFPTQVVQF PVFTASDRSN LLNCNRWYGY NILSKGDACD IRLWQPQLKE
201: NSPGEGDFYV RLVYAIPDSY HRIIKFSCDL SMKFVSVGND KGDIYVWDLK SFPPVLVTVS LDLAIPFPPS IIDSPTLIIM IRDRSDDLGK LPAGTVSI
101: GHRSEVLSVD FHASDMSRFV SCDMEATTKI WSLTESWKYV EMSFTWKDDP KTFPTQVVQF PVFTASDRSN LLNCNRWYGY NILSKGDACD IRLWQPQLKE
201: NSPGEGDFYV RLVYAIPDSY HRIIKFSCDL SMKFVSVGND KGDIYVWDLK SFPPVLVTVS LDLAIPFPPS IIDSPTLIIM IRDRSDDLGK LPAGTVSI
001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
Arabidopsis Description
FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.