Factsheet for Bra023933.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001446.1-P
Bra002667.1-P
Bra020379.1-P
Bra032169.1-P
Bra032592.1-P
Bra033334.1-P
Bra034764.1-P
Bra036300.1-P
Bra038707.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20740.1	Bra032592.1-P	AT1G02580.1	10962025
AT3G20740.1	Bra033334.1-P	AT1G02580.1	10962025
AT3G20740.1	Bra032592.1-P	AT1G02580.1	11114524
AT3G20740.1	Bra033334.1-P	AT1G02580.1	11114524
AT3G20740.1	Bra032592.1-P	AT1G02580.1	11148284
AT3G20740.1	Bra033334.1-P	AT1G02580.1	11148284
AT3G20740.1	Bra032592.1-P	AT1G02580.1	12970192
AT3G20740.1	Bra033334.1-P	AT1G02580.1	12970192
AT3G20740.1	Bra032592.1-P	AT1G02580.1	15456723
AT3G20740.1	Bra033334.1-P	AT1G02580.1	15456723
AT3G20740.1	Bra032592.1-P	AT1G02580.1	15469499
AT3G20740.1	Bra033334.1-P	AT1G02580.1	15469499
AT3G20740.1	Bra032592.1-P	AT1G02580.1	18812497
AT3G20740.1	Bra033334.1-P	AT1G02580.1	18812497
AT3G20740.1	Bra032169.1-P	AT2G23380.1	14871310
AT3G20740.1	Bra032169.1-P	AT2G23380.1	15456723
AT3G20740.1	Bra032169.1-P	AT2G23380.1	18812497
AT3G20740.1	Bra001446.1-P	AT3G12280.1	15221456
AT3G20740.1	Bra034764.1-P	AT3G12280.1	15221456
AT3G20740.1	Bra038707.1-P	AT3G12280.1	15221456
AT3G20740.1	Bra001446.1-P	AT3G12280.1	18812497
AT3G20740.1	Bra034764.1-P	AT3G12280.1	18812497
AT3G20740.1	Bra038707.1-P	AT3G12280.1	18812497
AT3G20740.1	Bra036300.1-P	AT4G02020.1	15456723
AT3G20740.1	Bra002667.1-P	AT5G58230.1	12970192
AT3G20740.1	Bra020379.1-P	AT5G58230.1	12970192
AT3G20740.1	Bra002667.1-P	AT5G58230.1	18812497
AT3G20740.1	Bra020379.1-P	AT5G58230.1	18812497

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53612	Canola	plastid	100.0	100.0
AT3G20740.1	Thale cress	cytosol	93.5	93.5
Bra035751.1-P	Field mustard	plastid	82.11	79.95
Bra035748.1-P	Field mustard	cytosol, nucleus, plastid	69.11	67.28
Bra035750.1-P	Field mustard	cytoskeleton, cytosol, nucleus	45.8	56.71
Bra041121.1-P	Field mustard	cytosol	9.21	47.89

Protein Annotations

MapMan:12.3.3.1.1.2	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra023933	EnsemblPlants:Bra023933.1	EnsemblPlants:Bra023933.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005677	GO:GO:0006139	GO:GO:0006349
GO:GO:0006464	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009409
GO:GO:0009628	GO:GO:0009791	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0019538
GO:GO:0035098	GO:GO:0040029	GO:GO:0043078	GO:GO:2000014	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M4E579	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR10253	PANTHER:PTHR10253:SF5	InterPro:Polycomb_EED	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI00025448EC	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

AT3G20740 (E=3e-209) FIE, FIS3, FIE1 | FIE (FERTILIZATION-INDEPENDENT ENDOSPERM); nucleotide binding / transcription factor/ transcription regulator

Coordinates

chrA01:+:21145414..21147797

Molecular Weight (calculated)

41443.4 Da

IEP (calculated)

6.255

GRAVY (calculated)

-0.138

Length

369 amino acids

Sequence
(BLAST)

001: MSKIALGNES LVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDSRFFN VFVTAGGNKI TLYNCLEDGA ISALQSYSDE DKEESFYTVS WACGVKGNPF
101: VAAGGVKGII RVIDVNNETI HKSLVGHGDS VNEIRTQPMK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPTEIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSYTWTDD PSKFPTKFVQ FPVFTASVHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGTSD VLQRYPVPMS DIWFIKFSCD
301: FQLSSLAIGN QEGKIYVWDL KSCPPVLITK LSHNQSKCVI RQTAMSVDGS TILAACEDGT IWRWDVITK

Best Arabidopsis Sequence Match ( AT3G20740.1 )
(BLAST)

001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK

Arabidopsis Description

FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.