Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023933.1-P | Field mustard | plastid | 100.0 | 100.0 |
| CDY27567 | Canola | plastid | 99.19 | 99.19 |
| AT3G20740.1 | Thale cress | cytosol | 93.5 | 93.5 |
| CDY19611 | Canola | plastid | 82.38 | 80.0 |
| CDY56255 | Canola | cytosol | 81.3 | 76.34 |
| CDY06378 | Canola | mitochondrion | 55.01 | 75.46 |
| CDY19607 | Canola | cytosol, nucleus, plastid | 80.49 | 75.38 |
| VIT_19s0014g05210.t01 | Wine grape | plastid | 73.98 | 73.78 |
| Solyc07g064090.2.1 | Tomato | nucleus | 73.44 | 72.85 |
| PGSC0003DMT400049479 | Potato | cytosol | 73.44 | 72.85 |
| KRH31935 | Soybean | cytosol | 73.17 | 70.68 |
| KRH71526 | Soybean | cytosol | 72.63 | 70.34 |
| GSMUA_Achr5P26370_001 | Banana | cytosol | 69.38 | 69.57 |
| Zm00001d024698_P002 | Maize | cytosol | 68.56 | 66.75 |
| Os08t0137100-01 | Rice | cytosol | 67.21 | 65.96 |
| KRH22237 | Soybean | cytosol | 68.02 | 65.19 |
| KRH27099 | Soybean | cytosol, mitochondrion, nucleus | 39.3 | 64.44 |
| CDY68274 | Canola | cytosol, nucleus | 35.23 | 63.73 |
| TraesCS7A01G089100.1 | Wheat | cytosol | 59.62 | 58.05 |
| TraesCS4A01G388400.1 | Wheat | cytosol, plastid | 59.08 | 57.67 |
| CDY19610 | Canola | cytoskeleton, cytosol, nucleus | 45.8 | 56.71 |
| TraesCS7A01G308300.1 | Wheat | nucleus, plastid | 66.12 | 51.59 |
| OQU79846 | Sorghum | plastid | 68.56 | 51.42 |
| HORVU7Hr1G073410.1 | Barley | cytosol | 65.31 | 50.63 |
| TraesCS7D01G305100.1 | Wheat | nucleus, plastid | 66.12 | 50.31 |
| Os08t0137250-01 | Rice | cytosol | 60.7 | 48.07 |
| TraesCS7A01G089200.1 | Wheat | cytoskeleton, cytosol, nucleus, plastid | 59.08 | 47.91 |
| TraesCS7D01G084500.1 | Wheat | plastid | 59.08 | 47.91 |
| EES13318 | Sorghum | mitochondrion | 57.45 | 47.22 |
| Zm00001d049608_P001 | Maize | mitochondrion | 57.45 | 45.99 |
| CDY10986 | Canola | extracellular | 12.47 | 22.33 |
Protein Annotations
| MapMan:12.3.3.1.1.2 | Gene3D:2.130.10.10 | UniProt:A0A078IUD5 | EnsemblPlants:CDY53612 | ProteinID:CDY53612 | ProteinID:CDY53612.1 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016571 | GO:GO:0019538 | GO:GO:0035098 | EnsemblPlantsGene:GSBRNA2T00011077001 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR10253 | PANTHER:PTHR10253:SF5 | InterPro:Polycomb_EED | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI00025448EC | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | : | : | : | : | : |
Description
BnaA01g25550DBnaA01g25550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUD5]
Coordinates
chrLK033220:+:30417..32859
Molecular Weight (calculated)
41443.4 Da
IEP (calculated)
6.255
GRAVY (calculated)
-0.138
Length
369 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKIALGNES LVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDSRFFN VFVTAGGNKI TLYNCLEDGA ISALQSYSDE DKEESFYTVS WACGVKGNPF
101: VAAGGVKGII RVIDVNNETI HKSLVGHGDS VNEIRTQPMK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPTEIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSYTWTDD PSKFPTKFVQ FPVFTASVHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGTSD VLQRYPVPMS DIWFIKFSCD
301: FQLSSLAIGN QEGKIYVWDL KSCPPVLITK LSHNQSKCVI RQTAMSVDGS TILAACEDGT IWRWDVITK
101: VAAGGVKGII RVIDVNNETI HKSLVGHGDS VNEIRTQPMK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPTEIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSYTWTDD PSKFPTKFVQ FPVFTASVHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGTSD VLQRYPVPMS DIWFIKFSCD
301: FQLSSLAIGN QEGKIYVWDL KSCPPVLITK LSHNQSKCVI RQTAMSVDGS TILAACEDGT IWRWDVITK
001: MSKITLGNES IVGSLTPSNK KSYKVTNRIQ EGKKPLYAVV FNFLDARFFD VFVTAGGNRI TLYNCLGDGA ISALQSYADE DKEESFYTVS WACGVNGNPY
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
101: VAAGGVKGII RVIDVNSETI HKSLVGHGDS VNEIRTQPLK PQLVITASKD ESVRLWNVET GICILIFAGA GGHRYEVLSV DFHPSDIYRF ASCGMDTTIK
201: IWSMKEFWTY VEKSFTWTDD PSKFPTKFVQ FPVFTASIHT NYVDCNRWFG DFILSKSVDN EILLWEPQLK ENSPGEGASD VLLRYPVPMC DIWFIKFSCD
301: LHLSSVAIGN QEGKVYVWDL KSCPPVLITK LSHNQSKSVI RQTAMSVDGS TILACCEDGT IWRWDVITK
Arabidopsis Description
FIEPolycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Source:UniProtKB/Swiss-Prot;Acc:Q9LT47]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.