Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX68573 | nucleus |
| CDX72453 | nucleus |
| CDX72643 | nucleus |
| CDX75405 | nucleus |
| CDX76265 | nucleus |
| CDX77460 | nucleus |
| CDX83112 | nucleus |
| CDX85167 | nucleus |
| CDX92996 | nucleus |
| CDX94841 | nucleus |
| CDY02095 | nucleus |
| CDY11608 | nucleus |
| CDY16998 | nucleus |
| CDY17797 | nucleus |
| CDY18083 | nucleus |
| CDY22172 | |
| CDY23022 | nucleus |
| CDY27567 | |
| CDY29570 | nucleus |
| CDY35481 | |
| CDY38800 | nucleus |
| CDY40826 | |
| CDY49278 | nucleus |
| CDY53612 | |
| CDY57741 | nucleus |
| CDY58656 | |
| CDY59943 | nucleus |
| CDY64587 | nucleus |
| CDY67142 | nucleus |
| CDY69708 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038707.1-P | Field mustard | nucleus | 98.92 | 98.53 |
| CDY52614 | Canola | cytosol | 96.16 | 96.83 |
| CDY08440 | Canola | nucleus | 92.02 | 91.93 |
| CDY42141 | Canola | cytosol | 91.03 | 90.86 |
| AT3G12280.1 | Thale cress | nucleus | 87.68 | 87.86 |
| CDX73827 | Canola | nucleus | 83.45 | 83.78 |
| CDY00765 | Canola | mitochondrion | 85.52 | 77.78 |
| KRH13310 | Soybean | nucleus | 68.77 | 69.45 |
| VIT_04s0008g02780.t01 | Wine grape | nucleus | 68.77 | 69.38 |
| KRH20664 | Soybean | nucleus | 68.57 | 68.64 |
| KRH63701 | Soybean | nucleus | 67.98 | 68.05 |
| PGSC0003DMT400030280 | Potato | nucleus | 66.7 | 66.63 |
| Solyc09g091280.2.1 | Tomato | cytosol | 66.5 | 66.31 |
| CDY52391 | Canola | nucleus | 14.38 | 63.2 |
| GSMUA_Achr8P00470_001 | Banana | nucleus | 60.2 | 60.8 |
| Os08t0538700-01 | Rice | nucleus | 58.92 | 59.21 |
| EES14166 | Sorghum | nucleus | 57.83 | 58.0 |
| Zm00001d052695_P016 | Maize | nucleus | 56.85 | 57.3 |
| Zm00001d031678_P003 | Maize | cytosol, nucleus, plastid | 57.04 | 56.6 |
| TraesCS7A01G264800.1 | Wheat | nucleus | 55.76 | 55.44 |
| TraesCS7B01G162700.4 | Wheat | nucleus, plastid | 55.57 | 55.24 |
| TraesCS7D01G265600.3 | Wheat | nucleus | 55.76 | 55.0 |
| GSMUA_Achr6P08220_001 | Banana | nucleus | 53.69 | 54.45 |
| HORVU7Hr1G055440.9 | Barley | plastid | 55.47 | 52.91 |
| TraesCS4A01G143200.1 | Wheat | plastid | 47.39 | 49.03 |
| Os11t0533500-01 | Rice | nucleus | 47.09 | 48.88 |
| TraesCS4B01G162200.1 | Wheat | nucleus | 46.8 | 48.42 |
| TraesCS4D01G159600.1 | Wheat | cytosol, nucleus, plastid | 46.8 | 48.42 |
| HORVU4Hr1G039890.2 | Barley | cytosol, nucleus, plastid | 46.7 | 48.37 |
| Zm00001d007407_P006 | Maize | cytosol, nucleus, plastid | 41.48 | 48.22 |
| OQU83580 | Sorghum | plastid | 40.79 | 47.7 |
| KXG21076 | Sorghum | plastid | 40.89 | 47.37 |
| Zm00001d052666_P014 | Maize | nucleus | 41.28 | 45.44 |
| KXG26019 | Sorghum | cytosol | 11.23 | 42.38 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.2.1 | GO:A0A078IMF7 | UniProt:A0A078IMF7 | EnsemblPlants:CDY50559 | ProteinID:CDY50559 |
| ProteinID:CDY50559.1 | ncoils:Coil | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006357 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0051726 | EnsemblPlantsGene:GSBRNA2T00096989001 |
| PFAM:PF01857 | PFAM:PF01858 | PFAM:PF11934 | PANTHER:PTHR13742 | PANTHER:PTHR13742:SF22 | InterPro:RBR |
| InterPro:RB_A | InterPro:RB_B | InterPro:RB_N | InterPro:RB_fam | SMART:SM00385 | SMART:SM01367 |
| SMART:SM01368 | SUPFAM:SSF47954 | UniParc:UPI0004EDC071 | SEG:seg | : | : |
Description
BnaA01g30730DBnaA01g30730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMF7]
Coordinates
chrLK032922:+:50024..54766
Molecular Weight (calculated)
112642.0 Da
IEP (calculated)
8.172
GRAVY (calculated)
-0.215
Length
1015 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEVQPPVTP PIDPNGKRSE ATLLDLCEKV LSLEGSVCDE VLKLFTETKR ILSANMANIG SGTREEVERF WFAFILYSVK MLTVRKQVDG QSVSGDNGFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGPVL CELYGADWEN RLQAKELQAN FVHLSLLSKY YKRGYREFFL TYDANAEKTS ANSASYLPDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCTNGLV SVLAILIIHV PCRFRNFSIQ DSSRFVKKGD KDVDLVASLC KIYDASEDEL RKIMNKANSL IETILKKRPS PASTCKTDTL
0301: DNIITDGLTY FEDLLDESSI STSLTTLEKD YDETVCNKGE LDERVFINEE DSLLGSGSLS AGAVNLTGAK RKIDSLSSPA RTFISPLSPH KSPAAKTTVT
0401: ATPVSTAMTT AKWLRTVICP LPPKPSPGLE LFLKSCDRDI TNDVTRRAHV ILEAIFPNSS LGDQCAGGSL QPVNLMDDIW AQQRRLEAVK LYYRVLEAMC
0501: KAEAQILHVN NLNSLLTNER FHRCMLACSA ELVLATHKSI TMLFPAVLER TGITAFDLSK VIESFIRHED SLPRELRRHL NSLEERLLES MVWERGSSMY
0601: NSLIVAKAPL ALEINRLGLL AEPMPSLDAI AALINFSEGS SNHASSVQKH EACPGQNGDI KSPKRLCTDY RSILVERSSF ASPVKERLLA LGNVKSKTLP
0701: PPLQSAFATP TRPNPGGGGE TCAETGINIF FTKINKLAAV RINGMVERLQ LSQQIRESVY CLFQRVLAQR TSLLFNRHID QIILCCFYGV AKISQMSLTF
0801: REIIYNYRKQ PQCKPLVFRS VFVDSSQGRR QGRVGPDHVD IITFYNDVFI PAVKPLLVEI VPVKKGQAVE ANNNPEGHCP GSPKVSVFPS VPDMSPKKVS
0901: AVHNVYVSPL RGSKMDALIS HSSKSYYACV GESTHAYQSP SKDLSAINNR LNNNNSSNRK RTLKFDVEAG LVSDSMVGNS LYQQNQNETD ASNQNQNGSD
1001: ASSSGGAPFK TEPQD
0101: LCQILRALKL NIVDFFKELP QFVVKAGPVL CELYGADWEN RLQAKELQAN FVHLSLLSKY YKRGYREFFL TYDANAEKTS ANSASYLPDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCTNGLV SVLAILIIHV PCRFRNFSIQ DSSRFVKKGD KDVDLVASLC KIYDASEDEL RKIMNKANSL IETILKKRPS PASTCKTDTL
0301: DNIITDGLTY FEDLLDESSI STSLTTLEKD YDETVCNKGE LDERVFINEE DSLLGSGSLS AGAVNLTGAK RKIDSLSSPA RTFISPLSPH KSPAAKTTVT
0401: ATPVSTAMTT AKWLRTVICP LPPKPSPGLE LFLKSCDRDI TNDVTRRAHV ILEAIFPNSS LGDQCAGGSL QPVNLMDDIW AQQRRLEAVK LYYRVLEAMC
0501: KAEAQILHVN NLNSLLTNER FHRCMLACSA ELVLATHKSI TMLFPAVLER TGITAFDLSK VIESFIRHED SLPRELRRHL NSLEERLLES MVWERGSSMY
0601: NSLIVAKAPL ALEINRLGLL AEPMPSLDAI AALINFSEGS SNHASSVQKH EACPGQNGDI KSPKRLCTDY RSILVERSSF ASPVKERLLA LGNVKSKTLP
0701: PPLQSAFATP TRPNPGGGGE TCAETGINIF FTKINKLAAV RINGMVERLQ LSQQIRESVY CLFQRVLAQR TSLLFNRHID QIILCCFYGV AKISQMSLTF
0801: REIIYNYRKQ PQCKPLVFRS VFVDSSQGRR QGRVGPDHVD IITFYNDVFI PAVKPLLVEI VPVKKGQAVE ANNNPEGHCP GSPKVSVFPS VPDMSPKKVS
0901: AVHNVYVSPL RGSKMDALIS HSSKSYYACV GESTHAYQSP SKDLSAINNR LNNNNSSNRK RTLKFDVEAG LVSDSMVGNS LYQQNQNETD ASNQNQNGSD
1001: ASSSGGAPFK TEPQD
0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS
1001: GGAAPLKTEP TDS
Arabidopsis Description
RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.