CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX76164
CDX83047
CDX87018
CDX87588
CDX88294
CDY05870
CDY13189
CDY46075
CDY63966
CDY66197
CDY67496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70210.1	CDX87588	AT1G76540.1	12857813
AT1G70210.1	CDX88294	AT1G76540.1	12857813
AT1G70210.1	CDY46075	AT2G23430.1	12569402
AT1G70210.1	CDY63966	AT2G23430.1	12569402
AT1G70210.1	CDX68497	AT3G48750.1	12857813
AT1G70210.1	CDX83047	AT3G48750.1	12857813
AT1G70210.1	CDX87018	AT3G48750.1	12857813
AT1G70210.1	CDY05870	AT3G48750.1	12857813
AT1G70210.1	CDY66197	AT3G48750.1	12857813
AT1G70210.1	CDY67496	AT3G48750.1	12857813
AT1G70210.1	CDX76164	AT3G54180.1	12857813
AT1G70210.1	CDY13189	AT3G54180.1	12857813

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67142	Canola	nucleus	91.14	97.05
CDY38800	Canola	nucleus	78.39	88.71
CDY11608	Canola	nucleus	77.84	88.64
AT1G70210.1	Thale cress	nucleus	77.56	82.6
VIT_01s0026g00710.t01	Wine grape	nucleus	57.62	64.2
KRH69476	Soybean	nucleus	57.62	61.36
Solyc05g006050.2.1	Tomato	nucleus	54.85	58.75
KRG99255	Soybean	nucleus	56.51	58.62
PGSC0003DMT400040287	Potato	nucleus	54.02	58.04
KRH45743	Soybean	nucleus	56.23	56.39
KRH74675	Soybean	nucleus, plastid	56.51	53.4
Os09t0382300-00	Rice	nucleus	41.83	49.03
TraesCS5B01G199100.1	Wheat	nucleus	42.11	47.5
TraesCS5A01G200500.2	Wheat	nucleus	42.38	47.22
OQU89443	Sorghum	nucleus	43.21	46.85
GSMUA_Achr3P06030_001	Banana	cytosol	37.95	46.28
GSMUA_Achr9P28180_001	Banana	nucleus	38.5	45.87
HORVU5Hr1G059770.2	Barley	nucleus	42.11	42.58
TraesCS5D01G206200.1	Wheat	nucleus	42.94	42.23
Zm00001d020353_P001	Maize	nucleus	36.57	39.88
GSMUA_Achr7P19980_001	Banana	nucleus	41.0	38.05
Os06t0236600-00	Rice	nucleus	37.67	37.47
CDY13755	Canola	nucleus	29.36	36.3
CDY54717	Canola	nucleus	26.59	36.09
CDX81286	Canola	nucleus	26.32	35.71
CDX97009	Canola	nucleus	26.59	32.76
CDX69832	Canola	nucleus	26.87	32.66
CDY30606	Canola	cytosol, nucleus, plastid	15.24	31.98
CDX76917	Canola	nucleus	31.3	31.92
CDX89480	Canola	nucleus	31.3	31.83
CDY37828	Canola	nucleus	27.15	31.72
CDY17742	Canola	nucleus	31.02	31.55
CDY33959	Canola	nucleus	26.59	31.48
CDY25602	Canola	nucleus	31.02	31.46
CDY30607	Canola	nucleus	30.47	31.16
CDY02095	Canola	nucleus	28.25	31.1
CDY08795	Canola	nucleus	26.32	30.84
CDY23022	Canola	nucleus	27.98	30.7
CDX83112	Canola	nucleus	29.92	30.68
CDY14561	Canola	cytosol	27.42	30.46
CDX68573	Canola	nucleus	29.36	30.11
CDY49278	Canola	nucleus	29.92	29.27
CDX72453	Canola	nucleus	29.09	29.17
CDY22116	Canola	nucleus	23.82	28.86
CDY57741	Canola	nucleus	29.09	28.77
CDX76265	Canola	nucleus	29.09	28.77
CDY69708	Canola	nucleus	29.09	28.07
CDX75405	Canola	nucleus	28.81	27.88
CDY01425	Canola	nucleus	27.15	27.68
CDY21951	Canola	nucleus	22.99	27.48
CDY12825	Canola	nucleus	27.15	27.37
CDX90892	Canola	nucleus	10.25	24.34
CDY29570	Canola	nucleus	22.44	24.25
CDY10467	Canola	cytosol	22.16	23.6
CDX72643	Canola	nucleus	22.16	23.53
CDY40332	Canola	cytosol	22.16	23.53
CDY55121	Canola	cytosol	20.78	21.87
CDX80803	Canola	cytosol	20.5	16.41

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	GO:A0A078J2I5	UniProt:A0A078J2I5	EnsemblPlants:CDY59943	ProteinID:CDY59943
ProteinID:CDY59943.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00027911001	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF206	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI0004EF0946	SEG:seg	:	:	:	:

Description

BnaAnng16340DBnaAnng16340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2I5]

Coordinates

chrLK033823:+:2830..5684

Molecular Weight (calculated)

40239.9 Da

IEP (calculated)

4.915

GRAVY (calculated)

-0.065

Length

361 amino acids

Sequence
(BLAST)

001: MLTSALCFSA YLGKFSTGYG DGMSGRRLSD CCKDMDLLCG EDSSDVFSGE STADISSEEI DSWPEESIAS CIEDERHFVP GLDYLSRFHS QSLDASARED
101: SVSWILKASV QAYYKFQPLT AYLAVNYMDR FLYARRLPET SGWPMQLLAV ACLSLAAKME EVLVPLLFDF QVEGVKYIFE AKTIQRMELL VLSVLDWRLR
201: SVTPFSFLSF FAYKIDPQGT SLGFFLTHAT KIILSNIKEA SFLDYRPSSI AAAAILCVAN ELPSLSSAVN PNESPETWCD GLSKEKIVRC YRLMKAMAIE
301: NNRRNSPKVI AKLRVSVRAA STLMMPSEEP SFSSSASLSS PCKRRKLSDY SWVGDDNSSS E

Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)

001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN

Arabidopsis Description

CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.