Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21951 | Canola | nucleus | 71.05 | 35.76 |
| CDY22116 | Canola | nucleus | 69.74 | 35.57 |
| AT4G03270.1 | Thale cress | nucleus | 69.74 | 35.1 |
| VIT_12s0134g00500.t01 | Wine grape | nucleus | 44.08 | 22.79 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 33.55 | 20.32 |
| PGSC0003DMT400039033 | Potato | nucleus | 41.45 | 20.26 |
| Solyc07g054950.1.1 | Tomato | nucleus | 40.79 | 20.0 |
| HORVU0Hr1G003280.5 | Barley | cytosol, mitochondrion, nucleus | 32.24 | 19.52 |
| KRH26876 | Soybean | nucleus | 40.13 | 19.37 |
| KRH22479 | Soybean | cytosol | 40.13 | 19.3 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 36.84 | 18.42 |
| KRH56054 | Soybean | cytosol, nucleus, plasma membrane | 39.47 | 18.24 |
| KRH25470 | Soybean | nucleus | 38.82 | 18.21 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 34.21 | 17.33 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 26.97 | 16.94 |
| TraesCS2D01G215000.3 | Wheat | cytosol, nucleus, plasma membrane | 31.58 | 15.34 |
| Zm00001d021745_P001 | Maize | cytosol, nucleus, plastid | 30.92 | 15.31 |
| EER99528 | Sorghum | cytosol | 31.58 | 15.29 |
| TraesCS2A01G208300.1 | Wheat | nucleus, peroxisome, plasma membrane | 30.92 | 15.16 |
| Os07t0556000-01 | Rice | cytosol | 30.92 | 14.69 |
| TraesCS2B01G234800.1 | Wheat | cytosol, nucleus, plasma membrane | 32.89 | 14.66 |
| CDX97009 | Canola | nucleus | 24.34 | 12.63 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 34.87 | 12.56 |
| CDX69832 | Canola | nucleus | 24.34 | 12.46 |
| CDY38800 | Canola | nucleus | 25.66 | 12.23 |
| CDY11608 | Canola | nucleus | 25.0 | 11.99 |
| CDX81286 | Canola | nucleus | 20.39 | 11.65 |
| CDY54717 | Canola | nucleus | 20.39 | 11.65 |
| CDY13755 | Canola | nucleus | 21.05 | 10.96 |
| CDY67142 | Canola | nucleus | 24.34 | 10.91 |
| CDY59943 | Canola | nucleus | 24.34 | 10.25 |
| CDY08795 | Canola | nucleus | 20.39 | 10.06 |
| CDY37828 | Canola | nucleus | 20.39 | 10.03 |
| CDY33959 | Canola | nucleus | 19.74 | 9.84 |
| CDY14561 | Canola | cytosol | 19.74 | 9.23 |
| CDX72453 | Canola | nucleus | 21.71 | 9.17 |
| CDX75405 | Canola | nucleus | 21.71 | 8.85 |
| CDY69708 | Canola | nucleus | 21.71 | 8.82 |
| CDY57741 | Canola | nucleus | 21.05 | 8.77 |
| CDX76265 | Canola | nucleus | 21.05 | 8.77 |
| CDX89480 | Canola | nucleus | 20.39 | 8.73 |
| CDY25602 | Canola | nucleus | 20.39 | 8.71 |
| CDY12825 | Canola | nucleus | 20.39 | 8.66 |
| CDY02095 | Canola | nucleus | 18.42 | 8.54 |
| CDY23022 | Canola | nucleus | 18.42 | 8.51 |
| CDX76917 | Canola | nucleus | 19.74 | 8.47 |
| CDY01425 | Canola | nucleus | 19.74 | 8.47 |
| CDY49278 | Canola | nucleus | 20.39 | 8.4 |
| CDY55121 | Canola | cytosol | 18.42 | 8.16 |
| CDY10467 | Canola | cytosol | 17.76 | 7.96 |
| CDX68573 | Canola | nucleus | 18.42 | 7.95 |
| CDX83112 | Canola | nucleus | 18.42 | 7.95 |
| CDY30607 | Canola | nucleus | 17.76 | 7.65 |
| CDY40332 | Canola | cytosol | 17.11 | 7.65 |
| CDY29570 | Canola | nucleus | 16.45 | 7.49 |
| CDX72643 | Canola | nucleus | 16.45 | 7.35 |
| CDY17742 | Canola | nucleus | 17.11 | 7.32 |
| CDX80803 | Canola | cytosol | 18.42 | 6.21 |
| HORVU7Hr1G117300.3 | Barley | cytosol | 5.92 | 5.45 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 1.97 | 1.74 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:35.1 | GO:A0A078DPJ8 | EnsemblPlants:CDX90892 | ProteinID:CDX90892 | ProteinID:CDX90892.1 |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_D_plant | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051726 | EnsemblPlantsGene:GSBRNA2T00151621001 |
| PFAM:PF02984 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF188 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0004EE4FCC |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g25720D
Coordinates
chrLK031864:+:1172794..1173502
Molecular Weight (calculated)
17735.6 Da
IEP (calculated)
8.044
GRAVY (calculated)
-0.063
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKQEISLCH LPATKRLNHY YNVNRMENVI LGALKWLMRS VTPVSFFSFY LSCLFNLKED PLVLKHSLKS QATDLTFNLQ YEINFFSFKP SVIAAAALLF
101: ASSELCPLQF PCFSNRICHC TYVNKDELME CYKAIPERDI VYENEKAMTQ QQ
101: ASSELCPLQF PCFSNRICHC TYVNKDELME CYKAIPERDI VYENEKAMTQ QQ
001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
Arabidopsis Description
CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.