Factsheet for Zm00001d021745_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007407_P006
Zm00001d014046_P001
Zm00001d015611_P002
Zm00001d027373_P003
Zm00001d027585_P001
Zm00001d027655_P001
Zm00001d031678_P003
Zm00001d032732_P002
Zm00001d044672_P005
Zm00001d048363_P001
Zm00001d048394_P001
Zm00001d048497_P002
Zm00001d052666_P014
Zm00001d052695_P016
Zm00001d053930_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03270.1	Zm00001d015611_P002	AT2G27960.1	20706207
AT4G03270.1	Zm00001d027655_P001	AT2G27960.1	20706207
AT4G03270.1	Zm00001d048394_P001	AT2G27960.1	20706207
AT4G03270.1	Zm00001d014046_P001	AT2G32710.1	20706207
AT4G03270.1	Zm00001d027585_P001	AT2G32710.1	20706207
AT4G03270.1	Zm00001d032732_P002	AT2G32710.1	20706207
AT4G03270.1	Zm00001d048363_P001	AT2G32710.1	20706207
AT4G03270.1	Zm00001d007407_P006	AT3G12280.1	22921914
AT4G03270.1	Zm00001d031678_P003	AT3G12280.1	22921914
AT4G03270.1	Zm00001d052666_P014	AT3G12280.1	22921914
AT4G03270.1	Zm00001d052695_P016	AT3G12280.1	22921914
AT4G03270.1	Zm00001d027373_P003	AT3G48750.1	20706207
AT4G03270.1	Zm00001d048497_P002	AT3G48750.1	20706207
AT4G03270.1	Zm00001d053930_P001	AT3G48750.1	20706207
AT4G03270.1	Zm00001d044672_P005	AT3G54180.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99528	Sorghum	cytosol	88.93	86.94
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	61.89	75.7
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	76.22	75.48
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	76.55	75.08
Os07t0556000-01	Rice	cytosol	75.57	72.5
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	77.85	70.09
HORVU7Hr1G117300.3	Barley	cytosol	29.97	55.76
GSMUA_Achr6P24270_001	Banana	nucleus	45.6	46.05
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	41.69	42.67
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	33.88	41.43
VIT_12s0134g00500.t01	Wine grape	nucleus	38.11	39.8
Solyc02g079370.2.1	Tomato	nucleus	34.53	35.69
KRH10729	Soybean	nucleus	31.6	35.66
PGSC0003DMT400057686	Potato	cytosol, nucleus, plasma membrane	34.53	35.33
KRH21593	Soybean	nucleus	30.94	34.93
Bra034198.1-P	Field mustard	nucleus	33.88	34.9
CDY22116	Canola	nucleus	33.88	34.9
CDY21951	Canola	nucleus	33.22	33.77
GSMUA_Achr9P12120_001	Banana	nucleus	46.25	33.65
KRH26876	Soybean	nucleus	33.88	33.02
KRH22479	Soybean	cytosol	33.55	32.59
VIT_00s0203g00160.t01	Wine grape	cytosol	33.55	32.59
Solyc07g054950.1.1	Tomato	nucleus	32.9	32.58
PGSC0003DMT400039033	Potato	nucleus	32.9	32.48
AT4G03270.1	Thale cress	nucleus	30.94	31.46
PGSC0003DMT400012934	Potato	nucleus	30.62	31.02
CDX90892	Canola	nucleus	15.31	30.92
KRH25470	Soybean	nucleus	32.25	30.56
KRH56054	Soybean	cytosol, nucleus, plasma membrane	32.57	30.4
Solyc03g006670.2.1	Tomato	nucleus	29.97	29.58
Zm00001d018128_P001	Maize	nucleus	28.66	24.79
Zm00001d052185_P001	Maize	nucleus	28.66	24.44
Zm00001d005928_P002	Maize	nucleus	28.34	24.1
Zm00001d029407_P001	Maize	nucleus	26.71	23.7
Zm00001d022175_P001	Maize	nucleus	28.34	23.08
Zm00001d050475_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	23.13	22.98
Zm00001d044984_P001	Maize	mitochondrion	19.87	22.1
Zm00001d020353_P001	Maize	nucleus	23.13	21.45
Zm00001d031837_P001	Maize	nucleus	27.04	19.58
Zm00001d033330_P001	Maize	nucleus	22.48	19.49
Zm00001d030894_P002	Maize	nucleus	21.82	19.42
Zm00001d013728_P001	Maize	cytosol	22.8	19.18
Zm00001d049334_P001	Maize	mitochondrion	18.24	19.18
Zm00001d041345_P001	Maize	cytosol	21.5	18.91
Zm00001d048143_P003	Maize	nucleus, peroxisome, plastid	20.85	18.13
Zm00001d019696_P001	Maize	cytosol	22.8	18.09
Zm00001d005293_P001	Maize	cytosol	22.8	17.9
Zm00001d038580_P001	Maize	plastid	18.24	16.82
Zm00001d048594_P001	Maize	cytosol	20.85	15.06
Zm00001d028092_P001	Maize	cytosol	12.38	13.97
Zm00001d003439_P001	Maize	plastid	5.21	12.6

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100282689	MapMan:13.1.1.1.4	UniProt:B6TAD6	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_D_plant	InterPro:Cyclin_N	EMBL:EU961951	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0051726
ProteinID:ONM58265.1	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF240
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000182BFFC	EnsemblPlantsGene:Zm00001d021745	EnsemblPlants:Zm00001d021745_P001	EnsemblPlants:Zm00001d021745_T001
SEG:seg	:	:	:	:	:

Description

CYCD6

Coordinates

chr7:-:162090191..162092437

Molecular Weight (calculated)

32980.2 Da

IEP (calculated)

5.915

GRAVY (calculated)

0.000

Length

307 amino acids

Sequence
(BLAST)

001: MATEEWELRE EDAYAYEFEF DLENPFTSPA DEPIASLLDA EGHHAPSISA AASATRRAAA AFISKVRFGG ELAVHPRVAY LALNYVDRFL SKRQLACEQQ
101: PWAPRLLAIS CLSLAAKMQR VATFSTADIQ RDEDFMFDAV TIRRMERVVL GALEWRARSV TPLAFLGFFL SACYPPPQHP PQVAAVKARA VDLLLHAQPE
201: VKMAEFSPSV VAAAALLAAA GEVAAANLHA FQASLAACPF VNSEKLRECG EVLAAAGGVG RGRAAPSADT PVTVLGHQRS ASSASETDWI NGGDAKKRCM
301: GPPSQWG

Best Arabidopsis Sequence Match ( AT4G03270.1 )
(BLAST)

001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY

Arabidopsis Description

CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.