Factsheet for Zm00001d029407_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92473	Sorghum	nucleus	82.37	82.37
Zm00001d044984_P001	Maize	mitochondrion	56.65	71.01
Zm00001d049334_P001	Maize	mitochondrion	50.29	59.59
Zm00001d038580_P001	Maize	plastid	51.73	53.75
Os03t0392000-00	Rice	cytosol, nucleus, plastid	34.68	48.78
Zm00001d022175_P001	Maize	nucleus	47.11	43.24
Zm00001d005928_P002	Maize	nucleus	38.15	36.57
Zm00001d050475_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	32.37	36.25
Zm00001d018128_P001	Maize	nucleus	36.71	35.77
Zm00001d052185_P001	Maize	nucleus	36.99	35.56
Zm00001d031837_P001	Maize	nucleus	38.73	31.6
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	23.7	26.71
Zm00001d041345_P001	Maize	cytosol	26.88	26.65
Zm00001d048143_P003	Maize	nucleus, peroxisome, plastid	25.14	24.65
Zm00001d033330_P001	Maize	nucleus	24.86	24.29
Zm00001d020353_P001	Maize	nucleus	23.12	24.17
Zm00001d030894_P002	Maize	nucleus	23.99	24.06
Zm00001d013728_P001	Maize	cytosol	25.14	23.84
Zm00001d019696_P001	Maize	cytosol	23.7	21.19
Zm00001d028092_P001	Maize	cytosol	16.47	20.96
Zm00001d005293_P001	Maize	cytosol	23.41	20.72
Zm00001d048594_P001	Maize	cytosol	21.97	17.88
Zm00001d003439_P001	Maize	plastid	5.78	15.75

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	UniProt:A0A1D6K4Y4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	ProteinID:ONL98662.1
PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF207
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0004DEA2A8	EnsemblPlantsGene:Zm00001d029407	EnsemblPlants:Zm00001d029407_P001
EnsemblPlants:Zm00001d029407_T001	SEG:seg	:	:	:	:

Description

Cyclin-D2-1

Coordinates

chr1:-:69168608..69171384

Molecular Weight (calculated)

38097.2 Da

IEP (calculated)

4.967

GRAVY (calculated)

-0.158

Length

346 amino acids

Sequence
(BLAST)

001: MGFRCGRASS SLLCEEDVAG MFGCNGHDDE EVGLLVLGMD TTFAALPSQS DEVVASLMEK EKEQLHSVAT GDYLQRLSSG GLESSCRIAA IDWIKKAQAY
101: HDFGPLSAYL AVNYLDRVLS TNQVPADADH QPWMPQLLSV ACLTIAAKME ETVVPRRLDI HQNQVLSEKY RFDLDAIQRM EIYILDSLNW RMQAVTPFSY
201: INYFVDKFTD GKPLSCGFIS RCTEIILGSL EATKLLQFRP SEMAAAVVLS AAAESQVIAF SGALLASNIL VNKENVRRCH EALQEVGLVK KKTDYSASPS
301: RVLDASCFSF KTDDNQTAGS SQSQANNNGN YNQAYSPASK RTRLDI

Best Arabidopsis Sequence Match ( AT5G65420.1 )
(BLAST)

001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS

Arabidopsis Description

CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.