Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER91226 | Sorghum | nucleus | 80.23 | 76.76 |
| Zm00001d013728_P001 | Maize | cytosol | 76.84 | 74.52 |
| TraesCS4B01G080500.1 | Wheat | nucleus | 58.47 | 61.61 |
| TraesCS4A01G234600.1 | Wheat | cytosol | 57.63 | 60.53 |
| TraesCS4D01G079400.1 | Wheat | cytosol | 57.06 | 59.94 |
| Os03t0617500-01 | Rice | cytosol, nucleus | 60.45 | 56.91 |
| Zm00001d030894_P002 | Maize | nucleus | 49.72 | 51.01 |
| HORVU4Hr1G013700.2 | Barley | plastid | 56.5 | 50.63 |
| Zm00001d041345_P001 | Maize | cytosol | 49.72 | 50.43 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 33.62 | 37.19 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 26.84 | 34.17 |
| GSMUA_Achr10P... | Banana | nucleus | 27.12 | 33.57 |
| VIT_18s0001g09160.t01 | Wine grape | nucleus | 29.66 | 33.12 |
| KRH61407 | Soybean | nucleus | 28.25 | 32.05 |
| Zm00001d048143_P003 | Maize | nucleus, peroxisome, plastid | 31.92 | 32.01 |
| KRH52092 | Soybean | nucleus | 28.25 | 31.85 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 28.53 | 31.76 |
| VIT_07s0129g00200.t01 | Wine grape | nucleus | 27.4 | 29.39 |
| Zm00001d028092_P001 | Maize | cytosol | 22.03 | 28.68 |
| KRH77118 | Soybean | nucleus | 26.27 | 28.01 |
| KRH28363 | Soybean | nucleus | 25.99 | 27.79 |
| AT4G37630.1 | Thale cress | nucleus | 23.45 | 25.7 |
| Zm00001d005928_P002 | Maize | nucleus | 25.99 | 25.48 |
| CDY29570 | Canola | nucleus | 23.73 | 25.15 |
| CDX72643 | Canola | nucleus | 24.01 | 25.0 |
| Bra017840.1-P | Field mustard | nucleus | 24.01 | 24.93 |
| Zm00001d029407_P001 | Maize | nucleus | 24.29 | 24.86 |
| Zm00001d050475_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.9 | 23.95 |
| Zm00001d052185_P001 | Maize | nucleus | 23.73 | 23.33 |
| Zm00001d018128_P001 | Maize | nucleus | 23.16 | 23.1 |
| Zm00001d022175_P001 | Maize | nucleus | 24.29 | 22.81 |
| Zm00001d021745_P001 | Maize | cytosol, nucleus, plastid | 19.49 | 22.48 |
| Zm00001d019696_P001 | Maize | cytosol | 24.29 | 22.22 |
| Zm00001d005293_P001 | Maize | cytosol | 24.29 | 21.99 |
| Zm00001d031837_P001 | Maize | nucleus | 24.58 | 20.52 |
| Zm00001d003439_P001 | Maize | plastid | 7.34 | 20.47 |
| Zm00001d020353_P001 | Maize | nucleus | 18.93 | 20.24 |
| Zm00001d044984_P001 | Maize | mitochondrion | 14.69 | 18.84 |
| Zm00001d049334_P001 | Maize | mitochondrion | 13.84 | 16.78 |
| Zm00001d048594_P001 | Maize | cytosol | 18.08 | 15.06 |
| Zm00001d038580_P001 | Maize | plastid | 14.12 | 15.02 |
Protein Annotations
| EnsemblPlants:Zm00001d033330_P001 | EnsemblPlants:Zm00001d033330_T001 | EnsemblPlantsGene:Zm00001d033330 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF255 | PFAM:PF00134 | PFAM:PF02984 | ProteinID:ONM07247.1 | SEG:seg |
| SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0008438537 | UniProt:A0A1D6KXS2 | MapMan:13.1.1.1.4 | : |
Description
Cyclin-D5-1
Coordinates
chr1:+:259214061..259215909
Molecular Weight (calculated)
37462.8 Da
IEP (calculated)
4.535
GRAVY (calculated)
-0.131
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MGERGAEEDG SGGSSLSLMC LEDGADLDAG GSAESADDGE PAVVAHSDAG EDQEEEYMDY LVSKESSFCC SPSSSPVSSD AGAETRPSST ASSSDEWFRC
101: ARHATVAWVL EPPDLQTRAY FGFSHRAAYL AVSYMDRFCL RRCMDVSVMP WAARLLAVAC LSLAAKMEEY RAPALSEFRA HDDYDFSSVC IRRVELLVLS
201: TLGWRMGGVT PLDYLPWLSS RLRRGGGGGL VAAKAAALIF SAAEAASVLD YRPSTVAVAA VLAAAHGAMT KEALECNMSS LTPSCLLDKD DVHACYSTML
301: SESSSPTPSK LADKRPPPSS SGSMTYESAD AASSFAATAG RSKRARLEMP SIGP
101: ARHATVAWVL EPPDLQTRAY FGFSHRAAYL AVSYMDRFCL RRCMDVSVMP WAARLLAVAC LSLAAKMEEY RAPALSEFRA HDDYDFSSVC IRRVELLVLS
201: TLGWRMGGVT PLDYLPWLSS RLRRGGGGGL VAAKAAALIF SAAEAASVLD YRPSTVAVAA VLAAAHGAMT KEALECNMSS LTPSCLLDKD DVHACYSTML
301: SESSSPTPSK LADKRPPPSS SGSMTYESAD AASSFAATAG RSKRARLEMP SIGP
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
Arabidopsis Description
CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.