Factsheet for TraesCS4B01G080500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G410900.1
TraesCS4B01G311000.1
TraesCS4B01G353600.1
TraesCS4D01G308900.1
TraesCS4D01G347600.1
TraesCS5A01G521700.1
TraesCS6A01G078200.1
TraesCS6B01G105100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37630.1	TraesCS4A01G410900.1	AT2G27960.1	20706207
AT4G37630.1	TraesCS4B01G311000.1	AT2G27960.1	20706207
AT4G37630.1	TraesCS4D01G308900.1	AT2G27960.1	20706207
AT4G37630.1	TraesCS4A01G410900.1	AT2G27970.1	20706207
AT4G37630.1	TraesCS4B01G311000.1	AT2G27970.1	20706207
AT4G37630.1	TraesCS4D01G308900.1	AT2G27970.1	20706207
AT4G37630.1	TraesCS4B01G353600.1	AT3G48750.1	20706207
AT4G37630.1	TraesCS4D01G347600.1	AT3G48750.1	20706207
AT4G37630.1	TraesCS5A01G521700.1	AT3G48750.1	20706207
AT4G37630.1	TraesCS6A01G078200.1	AT3G48750.1	20706207
AT4G37630.1	TraesCS6B01G105100.1	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G079400.1	Wheat	cytosol	97.32	97.03
TraesCS4A01G234600.1	Wheat	cytosol	95.83	95.55
HORVU4Hr1G013700.2	Barley	plastid	96.43	82.03
Os03t0617500-01	Rice	cytosol, nucleus	70.54	63.03
EER91226	Sorghum	nucleus	65.18	59.19
Zm00001d013728_P001	Maize	cytosol	63.99	58.9
Zm00001d033330_P001	Maize	nucleus	61.61	58.47
TraesCS5B01G075000.1	Wheat	nucleus	59.23	56.53
GSMUA_Achr4P07110_001	Banana	nucleus	35.12	36.88
GSMUA_Achr6P16910_001	Banana	cytosol	28.57	34.53
TraesCS4B01G257900.1	Wheat	cytosol	32.74	33.33
VIT_18s0001g09160.t01	Wine grape	nucleus	30.95	32.81
GSMUA_Achr10P...	Banana	nucleus	27.68	32.52
GSMUA_Achr6P07740_001	Banana	nucleus	29.76	31.45
KRH61407	Soybean	nucleus	28.57	30.77
KRH52092	Soybean	nucleus	28.57	30.57
VIT_07s0129g00200.t01	Wine grape	nucleus	28.27	28.79
AT4G37630.1	Thale cress	nucleus	27.08	28.17
KRH28363	Soybean	nucleus	27.08	27.49
KRH77118	Soybean	nucleus	26.79	27.11
CDY29570	Canola	nucleus	26.49	26.65
CDX72643	Canola	nucleus	26.79	26.47
Bra017840.1-P	Field mustard	nucleus	26.79	26.39
TraesCS5B01G199100.1	Wheat	nucleus	24.11	25.31
TraesCS6B01G345300.1	Wheat	plastid	26.49	25.21
TraesCS5B01G158400.1	Wheat	cytosol	26.19	24.86
TraesCS5B01G243900.1	Wheat	nucleus	25.89	24.51
TraesCS2B01G190700.1	Wheat	nucleus	25.0	24.42
TraesCS5B01G244100.1	Wheat	nucleus	25.89	24.17
TraesCS4B01G140400.1	Wheat	cytosol, nucleus, plastid	19.94	20.18
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	20.24	19.94

Protein Annotations

EnsemblPlants:TraesCS4B01G080500.1	EnsemblPlantsGene:TraesCS4B01G080500	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	PANTHER:PTHR10177
PANTHER:PTHR10177:SF225	PFAM:PF00134	PFAM:PF02984	SEG:seg	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.4	:	:	:

Description

No Description!

Coordinates

chr4B:-:78485722..78487098

Molecular Weight (calculated)

36571.0 Da

IEP (calculated)

4.595

GRAVY (calculated)

-0.171

Length

336 amino acids

Sequence
(BLAST)

001: MEAEDYAAGC CFSLMCQEDG ADLGDGFADD DGGKLLLMCS AGDDNDGEED EEGYMDHLVS KESSFCSADP SPSMASEDWF QCARRDTVRW ILETRGHFGF
101: SHRTAYVAIA YFDRFSLRRC VDRSVMPWAA RLLAIACVSL AAKMDECQAP ALSEFRADDD YDFSCDSIRR MEMLVLSTLD WRMGAVTPFD YLPCLSSRLR
201: RFNGGGRGGG GGLIAVKAAA LIFSAAEAAS VLDYRPSTVA AVAVLAATHG ALTREPLESK ISSLSPTCLL EKEDVYACYT MMLRDPSSPS KTAKRSASDR
301: GDADSTYARL DAASFSVAAA MNNNKRVRLE LPAVHR

Best Arabidopsis Sequence Match ( AT4G37630.1 )
(BLAST)

001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL

Arabidopsis Description

CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.