Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G308900.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS4B01G311000.1 | Wheat | nucleus | 100.0 | 100.0 |
| Os03t0146300-01 | Rice | nucleus | 92.22 | 92.22 |
| AT2G27960.1 | Thale cress | cytosol | 84.44 | 87.36 |
| Zm00001d048394_P001 | Maize | nucleus | 83.33 | 86.21 |
| AT2G27970.1 | Thale cress | nucleus | 78.89 | 85.54 |
| KXG40187 | Sorghum | nucleus | 82.22 | 85.06 |
| GSMUA_Achr2P11710_001 | Banana | nucleus | 87.78 | 84.95 |
| KRH25124 | Soybean | cytosol | 82.22 | 84.09 |
| KRH30550 | Soybean | cytosol | 82.22 | 84.09 |
| VIT_06s0061g00810.t01 | Wine grape | cytosol | 81.11 | 82.95 |
| PGSC0003DMT400001218 | Potato | cytosol | 80.0 | 81.82 |
| PGSC0003DMT400048460 | Potato | cytosol | 78.89 | 80.68 |
| CDY30517 | Canola | cytosol | 71.11 | 79.01 |
| CDX77145 | Canola | cytosol | 71.11 | 79.01 |
| Bra034380.1-P | Field mustard | cytosol | 71.11 | 79.01 |
| HORVU4Hr1G079310.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 98.89 | 66.42 |
| Zm00001d027655_P001 | Maize | cytosol | 76.67 | 66.35 |
| GSMUA_Achr2P11750_001 | Banana | cytosol | 87.78 | 59.4 |
| Zm00001d015611_P002 | Maize | plastid | 67.78 | 34.08 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G410900.1 | EnsemblPlantsGene:TraesCS4A01G410900 | Gene3D:3.30.170.10 | GO:GO:0003674 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016538 | GO:GO:0030234 | InterPro:Cyclin-dep_kinase_reg-sub | InterPro:Cyclin-dep_kinase_reg-sub_sf | InterPro:IPR036858 |
| PANTHER:PTHR23415 | PANTHER:PTHR23415:SF29 | PFAM:PF01111 | PRINTS:PR00296 | ScanProsite:PS00944 | SEG:seg |
| SMART:SM01084 | SUPFAM:SSF55637 | MapMan:13.1.1.2.8 | : | : | : |
Description
No Description!
Coordinates
chr4A:+:683769319..683769794
Molecular Weight (calculated)
10577.7 Da
IEP (calculated)
9.465
GRAVY (calculated)
-0.622
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MGQIQYSEKY FDDTFEYRHV VLPPEVAKLL PKNRLLAENE WRALGVQQSR GWVHYAVHRP EPHIMLFRRP LNYQQQQDAA AAAAAQMMPK
1: MGQIQYSDKY FDDTFEYRHV VLPPEVAKLL PKNRILSESE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRP LNYQQEHQAQ IAK
Arabidopsis Description
CKS2Cyclin-dependent kinases regulatory subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.