Factsheet for TraesCS3A01G395000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G388700.1	Wheat	nucleus	92.72	93.99
TraesCS3B01G426900.1	Wheat	nucleus	93.26	93.26
HORVU3Hr1G089090.2	Barley	nucleus	91.37	89.68
Zm00001d042482_P001	Maize	nucleus	61.46	62.98
Os01t0900800-01	Rice	nucleus	65.23	62.53
KXG33923	Sorghum	plastid	63.07	53.67
CDY70200	Canola	nucleus	14.02	51.49
GSMUA_Achr1P27710_001	Banana	nucleus	44.47	49.25
GSMUA_Achr8P01370_001	Banana	nucleus	42.32	48.61
KRG93108	Soybean	extracellular	34.23	44.41
VIT_05s0124g00240.t01	Wine grape	plastid	38.01	39.94
TraesCS6A01G214900.1	Wheat	nucleus	33.15	39.17
GSMUA_Achr8P32130_001	Banana	mitochondrion	44.47	39.1
PGSC0003DMT400016793	Potato	nucleus, plastid	35.85	38.22
CDY42800	Canola	nucleus	20.75	37.93
Bra000291.1-P	Field mustard	nucleus	20.75	37.93
CDX83499	Canola	nucleus	20.75	37.93
Solyc09g098110.2.1	Tomato	nucleus, plastid	34.77	36.13
AT2G43140.2	Thale cress	nucleus	29.11	34.95
Bra015456.1-P	Field mustard	nucleus, plastid	33.42	34.44
Bra004748.1-P	Field mustard	nucleus	28.3	34.31
AT1G05805.1	Thale cress	nucleus, plastid	33.42	34.25
CDY51319	Canola	nucleus, plastid	33.15	34.17
CDY17944	Canola	nucleus	28.3	33.76
CDY10149	Canola	nucleus, plastid	31.54	33.24
CDY30384	Canola	nucleus	27.22	32.9
Bra037732.1-P	Field mustard	nucleus	26.15	31.91
TraesCS7A01G245800.1	Wheat	nucleus	30.46	29.5
CDY66632	Canola	cytosol, nucleus, plastid	12.4	27.88
TraesCS5A01G264800.1	Wheat	plastid	28.03	25.43
CDY10155	Canola	nucleus, plastid	18.33	24.11

Protein Annotations

EnsemblPlants:TraesCS3A01G395000.1	EnsemblPlantsGene:TraesCS3A01G395000	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR16223	PANTHER:PTHR16223:SF33	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr3A:-:642208906..642212310

Molecular Weight (calculated)

39486.3 Da

IEP (calculated)

7.860

GRAVY (calculated)

-0.663

Length

371 amino acids

Sequence
(BLAST)

001: MNRPTPAHQR GMPPPPQLAR YGSAPGSFLA ALADSVARGG GGGEVPSHSQ PQQQQHQQHQ PVAAVVSRFF SGESSGLTSC ESSCRTADAP APLQRAYGGS
101: SEIHVPLPQQ QQQQPGLLRH SSSPAGLLSR LMADPHGNGG MGGARGGMGS GYAHSQGGGN VDAVAAQQRR LSSQWSFSRQ QDMMPHIAEM GMAMHTPTPM
201: PPADVGESIG TGHGNGSGDL SRSFSMSSWD DTNSNIIFSA PGGGGKKAKL MADGDDGMVT SYSNIDSQFG SSLDMPGMDD YLQLQQDSVA CRVRAKRGCA
301: THPRSIAERE RRTRISKRLR RLQDLVPNMD KQTNTSDMLD IAVDYIKVLQ DQIEKLKQDQ GNCSCSADQK C

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.