Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66632 | Canola | cytosol, nucleus, plastid | 47.27 | 89.09 |
| CDY42800 | Canola | nucleus | 54.98 | 84.24 |
| CDX83499 | Canola | nucleus | 54.66 | 83.74 |
| AT2G43140.2 | Thale cress | nucleus | 81.35 | 81.88 |
| CDY70200 | Canola | nucleus | 25.4 | 78.22 |
| CDY30384 | Canola | nucleus | 77.17 | 78.18 |
| KRG93108 | Soybean | extracellular | 43.09 | 46.85 |
| VIT_05s0124g00240.t01 | Wine grape | plastid | 47.27 | 41.64 |
| CDY51319 | Canola | nucleus, plastid | 44.37 | 38.33 |
| PGSC0003DMT400016793 | Potato | nucleus, plastid | 42.77 | 38.22 |
| KXG26599 | Sorghum | nucleus | 24.76 | 38.12 |
| Solyc09g098110.2.1 | Tomato | nucleus, plastid | 42.44 | 36.97 |
| CDY10149 | Canola | nucleus, plastid | 41.8 | 36.93 |
| GSMUA_Achr1P27710_001 | Banana | nucleus | 39.23 | 36.42 |
| TraesCS6B01G244800.1 | Wheat | nucleus | 34.08 | 34.98 |
| GSMUA_Achr6P21220_001 | Banana | vacuole | 31.19 | 34.77 |
| TraesCS6D01G197500.1 | Wheat | nucleus | 34.08 | 34.42 |
| TraesCS6A01G214900.1 | Wheat | nucleus | 34.08 | 33.76 |
| Zm00001d017138_P001 | Maize | nucleus | 34.41 | 32.92 |
| HORVU6Hr1G054910.7 | Barley | nucleus | 33.44 | 32.1 |
| EES05388 | Sorghum | nucleus | 34.73 | 31.95 |
| GSMUA_Achr8P01370_001 | Banana | nucleus | 33.12 | 31.89 |
| Zm00001d042482_P001 | Maize | nucleus | 36.66 | 31.49 |
| CDY28415 | Canola | nucleus | 24.12 | 30.86 |
| Os01t0900800-01 | Rice | nucleus | 38.26 | 30.75 |
| CDY41870 | Canola | nucleus | 24.12 | 30.74 |
| CDY61281 | Canola | nucleus | 24.44 | 30.28 |
| CDY69278 | Canola | nucleus | 23.47 | 30.17 |
| TraesCS3D01G388700.1 | Wheat | nucleus | 35.05 | 29.78 |
| CDX91761 | Canola | nucleus | 23.47 | 29.67 |
| Os04t0489600-02 | Rice | nucleus | 34.73 | 29.27 |
| TraesCS3B01G426900.1 | Wheat | nucleus | 34.08 | 28.57 |
| TraesCS3A01G395000.1 | Wheat | nucleus | 33.76 | 28.3 |
| HORVU3Hr1G089090.2 | Barley | nucleus | 33.76 | 27.78 |
| GSMUA_Achr8P32130_001 | Banana | mitochondrion | 36.66 | 27.01 |
| CDX79884 | Canola | nucleus, plastid | 27.97 | 26.61 |
| CDY14822 | Canola | nucleus | 29.26 | 26.38 |
| CDY53498 | Canola | nucleus, plastid | 27.33 | 26.15 |
| CDY10155 | Canola | nucleus, plastid | 23.47 | 25.89 |
| CDY47961 | Canola | nucleus | 28.94 | 25.86 |
| Os02t0603600-01 | Rice | nucleus | 14.47 | 25.42 |
| KXG33923 | Sorghum | plastid | 34.41 | 24.54 |
| CDY22828 | Canola | nucleus | 27.97 | 24.1 |
| CDY25213 | Canola | nucleus | 27.97 | 23.9 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078FXQ2 | UniProt:A0A078FXQ2 | EnsemblPlants:CDY17944 | ProteinID:CDY17944 |
| ProteinID:CDY17944.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00002303001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF51 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EC4B3F | InterPro:bHLH_dom | SEG:seg |
Description
BnaC04g02750DBnaC04g02750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXQ2]
Coordinates
chrLK032079:+:720229..724380
Molecular Weight (calculated)
33863.2 Da
IEP (calculated)
7.971
GRAVY (calculated)
-0.907
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MYPPPSSSKS TVPDGGDAND NGHDSAAGAT RDFSSLGSQT HYNPPRPPPH QRQQHNPNVV GLGDYFPDDP SNTGFDPGAS SSSPLFRHRS SPAGFYDQHL
101: PTANGFSLGR PNGGYGGGER GPPGLKPELR FSGGSSSSSH QERNSLQRIS EVEAAAAAIK GVPSTSMTFG NDHNNWDNSS SHISFTIDEP GKRSKTTDFF
201: TLETQFSMPQ TSLEMARMES MMNIPEDSVP CRTRAKRGCA THPRSIAERE RRTRISGKLK KLQELVPNMD KQTSYADMLD LAVEHIKGLQ HQVESLEKGM
301: ERCTCGACKK R
101: PTANGFSLGR PNGGYGGGER GPPGLKPELR FSGGSSSSSH QERNSLQRIS EVEAAAAAIK GVPSTSMTFG NDHNNWDNSS SHISFTIDEP GKRSKTTDFF
201: TLETQFSMPQ TSLEMARMES MMNIPEDSVP CRTRAKRGCA THPRSIAERE RRTRISGKLK KLQELVPNMD KQTSYADMLD LAVEHIKGLQ HQVESLEKGM
301: ERCTCGACKK R
001: MYPPNSSKST AHDGGGDADT NQYDSAAGAT RDFSSLGPQT HHHPPPQRQQ QHQQNPNLVG HYLPGEPSSI GFDSNASSSS SLFRHRSSPA GFYDQHLPTD
101: PNGFSLGRPN GGYGGGGEQG PSRLKSELRF SSGSSSHQEH NSLPRISEVE AAAAARNGVA SSSMSFGNNR TNNWDNSSSH ISFTIDQPGK RSKNSDFFTL
201: ETQYSMPQTT LEMATMENLM NIPEDSVPCR ARAKRGFATH PRSIAERERR TRISGKLKKL QELVPNMDKQ TSYADMLDLA VEHIKGLQHQ VESLEKGMER
301: CTCGACKKR
101: PNGFSLGRPN GGYGGGGEQG PSRLKSELRF SSGSSSHQEH NSLPRISEVE AAAAARNGVA SSSMSFGNNR TNNWDNSSSH ISFTIDQPGK RSKNSDFFTL
201: ETQYSMPQTT LEMATMENLM NIPEDSVPCR ARAKRGFATH PRSIAERERR TRISGKLKKL QELVPNMDKQ TSYADMLDLA VEHIKGLQHQ VESLEKGMER
301: CTCGACKKR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.