Factsheet for GSMUA_Achr1P27710_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P01370_001	Banana	nucleus	64.48	66.87
GSMUA_Achr8P32130_001	Banana	mitochondrion	80.3	63.74
CDY70200	Canola	nucleus	17.01	56.44
KRG93108	Soybean	extracellular	42.99	50.35
GSMUA_Achr6P21220_001	Banana	vacuole	41.49	49.82
VIT_05s0124g00240.t01	Wine grape	plastid	49.85	47.31
Zm00001d042482_P001	Maize	nucleus	50.45	46.69
TraesCS3D01G388700.1	Wheat	nucleus	49.55	45.36
Os01t0900800-01	Rice	nucleus	51.94	44.96
TraesCS3A01G395000.1	Wheat	nucleus	49.25	44.47
TraesCS3B01G426900.1	Wheat	nucleus	48.96	44.2
HORVU3Hr1G089090.2	Barley	nucleus	49.55	43.92
CDY42800	Canola	nucleus	26.27	43.35
CDX83499	Canola	nucleus	25.97	42.86
Bra000291.1-P	Field mustard	nucleus	25.97	42.86
PGSC0003DMT400016793	Potato	nucleus, plastid	44.18	42.53
Solyc09g098110.2.1	Tomato	nucleus, plastid	42.99	40.34
Bra004748.1-P	Field mustard	nucleus	36.42	39.87
KXG33923	Sorghum	plastid	51.34	39.45
CDY17944	Canola	nucleus	36.42	39.23
Bra015456.1-P	Field mustard	nucleus, plastid	42.09	39.17
CDY51319	Canola	nucleus, plastid	41.79	38.89
AT1G05805.1	Thale cress	nucleus, plastid	41.79	38.67
AT2G43140.2	Thale cress	nucleus	34.63	37.54
CDY10149	Canola	nucleus, plastid	39.4	37.5
CDY30384	Canola	nucleus	34.03	37.13
Bra037732.1-P	Field mustard	nucleus	32.84	36.18
CDY66632	Canola	cytosol, nucleus, plastid	17.61	35.76
GSMUA_Achr7P20490_001	Banana	nucleus	36.12	34.47
GSMUA_Achr5P22310_001	Banana	nucleus	37.91	32.82
GSMUA_Achr3P11110_001	Banana	nucleus	33.73	28.68
CDY10155	Canola	nucleus, plastid	23.28	27.66
GSMUA_Achr9P27780_001	Banana	nucleus	33.73	27.23

Protein Annotations

EnsemblPlants:GSMUA_Achr1P27710_001	EnsemblPlants:GSMUA_Achr1T27710_001	EnsemblPlantsGene:GSMUA_Achr1G27710_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR16223	PANTHER:PTHR16223:SF33	PFAM:PF00010	PFscan:PS50888	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000296F28B	UniProt:M0S3M8	MapMan:15.5.32	:	:

Description

Putative Transcription factor bHLH128 [Source:GMGC_GENE;Acc:GSMUA_Achr1G27710_001]

Coordinates

chr1:-:25926088..25931797

Molecular Weight (calculated)

35868.7 Da

IEP (calculated)

6.912

GRAVY (calculated)

-0.550

Length

335 amino acids

Sequence
(BLAST)

001: MGLSRYGSAP GSFLSGLADS VATGRGGEEL SAVGSEGMIG RFFSGDSPCL TSESSCRAAC RGSDRDTPGA PATGGACLHG PYAPEALQVS AAGSPLVRHS
101: SSPAGFFSHL LTDHGLSATR AIGNYSQAGT DGIHAYANRR LRSQWSFSRQ DSLSQISELS IPEIGETDTC CNSSDEATGH AGQSYISGNF QLGSWDDNNS
201: IVFTAPPSKR AKDNNGDIVT GLSNVDSQFS LPRTSSEMSA LEKYLQVQQD SVPCRVRAKR GCATHPRSIA ERERRTRISK RLQKLQDLVP NMDKQTSTSD
301: MLELAIQHIK ELQSQVQKLK QEQANCTCPE MQEKA

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.