Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d042482_P001 | Maize | nucleus | 65.63 | 70.17 |
| TraesCS3D01G388700.1 | Wheat | nucleus | 63.57 | 67.21 |
| TraesCS3B01G426900.1 | Wheat | nucleus | 63.82 | 66.58 |
| TraesCS3A01G395000.1 | Wheat | nucleus | 62.53 | 65.23 |
| HORVU3Hr1G089090.2 | Barley | nucleus | 63.57 | 65.08 |
| KXG33923 | Sorghum | plastid | 68.99 | 61.24 |
| CDY70200 | Canola | nucleus | 14.21 | 54.46 |
| GSMUA_Achr8P01370_001 | Banana | nucleus | 43.67 | 52.32 |
| GSMUA_Achr1P27710_001 | Banana | nucleus | 44.96 | 51.94 |
| KRG93108 | Soybean | extracellular | 34.88 | 47.2 |
| VIT_05s0124g00240.t01 | Wine grape | plastid | 40.57 | 44.48 |
| GSMUA_Achr8P32130_001 | Banana | mitochondrion | 44.19 | 40.52 |
| PGSC0003DMT400016793 | Potato | nucleus, plastid | 36.18 | 40.23 |
| CDY42800 | Canola | nucleus | 20.93 | 39.9 |
| Bra000291.1-P | Field mustard | nucleus | 20.93 | 39.9 |
| CDX83499 | Canola | nucleus | 20.93 | 39.9 |
| AT2G43140.2 | Thale cress | nucleus | 31.01 | 38.84 |
| Solyc09g098110.2.1 | Tomato | nucleus, plastid | 35.66 | 38.66 |
| Bra004748.1-P | Field mustard | nucleus | 30.49 | 38.56 |
| CDY17944 | Canola | nucleus | 30.75 | 38.26 |
| AT1G05805.1 | Thale cress | nucleus, plastid | 35.4 | 37.85 |
| Bra015456.1-P | Field mustard | nucleus, plastid | 34.63 | 37.22 |
| CDY51319 | Canola | nucleus, plastid | 34.37 | 36.94 |
| CDY10149 | Canola | nucleus, plastid | 32.56 | 35.8 |
| CDY30384 | Canola | nucleus | 28.17 | 35.5 |
| Os02t0603600-01 | Rice | nucleus | 16.02 | 35.03 |
| Os04t0489600-02 | Rice | nucleus | 33.33 | 34.96 |
| Bra037732.1-P | Field mustard | nucleus | 26.87 | 34.21 |
| CDY66632 | Canola | cytosol, nucleus, plastid | 13.7 | 32.12 |
| Os08t0506700-01 | Rice | nucleus | 32.56 | 31.58 |
| Os09t0487900-01 | Rice | nucleus | 31.52 | 30.42 |
| CDY10155 | Canola | nucleus, plastid | 19.38 | 26.6 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:4325038 | EMBL:AK068254 | ProteinID:BAD82103.1 | ProteinID:BAF07020.1 |
| ProteinID:BAS75745.1 | GO:GO:0001046 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006366 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| EnsemblPlantsGene:Os01g0900800 | EnsemblPlants:Os01t0900800-01 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF33 |
| UniProt:Q5N8U8 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000049E983 | RefSeq:XP_015613853.1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
basic helix-loop-helix protein 109Helix-loop-helix DNA-binding domain containing protein. (Os01t0900800-01);Similar to BHLH transcription factor (Fragment). (Os01t0900800-02)
Coordinates
chr1:+:39211307..39216467
Molecular Weight (calculated)
40699.7 Da
IEP (calculated)
8.118
GRAVY (calculated)
-0.503
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRMTAPHGG MPPPPMPAAG GLARYGSAPG SLLASIADSV IRGRGVGVVD QLHHHQHQHQ LPPPPPPQQQ QMVGRYFSAE SSGLTSCESS CRTTTTTSTA
101: AAADVGRHPL ERAYGGSGEI HVDASSAAVP LFRHSSSPAG LLSRLMADPH GNGMAATRGM GGYSGGGGDA GAMAHRRLSS QWSFSRQDLP QISEMGGLIP
201: DIGESIVTGG GGNSSSDGAG HGAQSSSFLS SRNFSMSSWD DTNSIMFSPP SSSKKARVAA AAAGDHGDDM VSSFSNIDSQ FGLSKQSSLE MAGMDDFLQL
301: QPDSVACRAR AKRGCATHPR SIAERERRTR ISKRLKKLQD LVPNMDKQTN TSDMLDIAVT YIKELQGQVE KLKHDQANCT CSGKHDC
101: AAADVGRHPL ERAYGGSGEI HVDASSAAVP LFRHSSSPAG LLSRLMADPH GNGMAATRGM GGYSGGGGDA GAMAHRRLSS QWSFSRQDLP QISEMGGLIP
201: DIGESIVTGG GGNSSSDGAG HGAQSSSFLS SRNFSMSSWD DTNSIMFSPP SSSKKARVAA AAAGDHGDDM VSSFSNIDSQ FGLSKQSSLE MAGMDDFLQL
301: QPDSVACRAR AKRGCATHPR SIAERERRTR ISKRLKKLQD LVPNMDKQTN TSDMLDIAVT YIKELQGQVE KLKHDQANCT CSGKHDC
001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS
Arabidopsis Description
BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.