Factsheet for Os09t0487900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020932_P001	Maize	nucleus	69.08	67.89
Zm00001d006022_P001	Maize	nucleus, plastid	67.58	66.75
TraesCS5B01G264300.1	Wheat	plastid	66.08	64.63
TraesCS5D01G272800.1	Wheat	plastid	66.33	64.1
TraesCS5A01G264800.1	Wheat	plastid	65.34	64.06
Os08t0506700-01	Rice	nucleus	62.59	62.91
KXG35904	Sorghum	nucleus, plastid	67.83	61.26
KRH38466	Soybean	nucleus	10.47	50.0
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	22.19	48.63
VIT_06s0004g01740.t01	Wine grape	nucleus	32.17	43.43
VIT_08s0007g07810.t01	Wine grape	nucleus	39.4	40.1
KRH71888	Soybean	nucleus, plastid	37.41	39.68
GSMUA_Achr3P11110_001	Banana	nucleus	38.15	38.83
Bra004678.1-P	Field mustard	nucleus, plastid	31.42	38.65
CDY53498	Canola	nucleus, plastid	31.17	38.46
CDX79884	Canola	nucleus, plastid	31.17	38.23
VIT_13s0064g01290.t01	Wine grape	nucleus, plastid	36.16	37.86
CDY14822	Canola	nucleus	32.17	37.39
KRH33007	Soybean	nucleus, plastid	35.66	37.24
PGSC0003DMT400021062	Potato	nucleus	35.16	37.11
AT2G42280.3	Thale cress	nucleus	33.17	36.94
CDY47961	Canola	nucleus	31.92	36.78
KRH23160	Soybean	nucleus	37.41	36.76
Bra016886.1-P	Field mustard	nucleus	31.67	36.49
Solyc10g079050.1.1	Tomato	nucleus	34.41	36.32
GSMUA_Achr9P27780_001	Banana	nucleus	37.41	36.14
KRG95337	Soybean	nucleus	34.16	35.77
KRH24679	Soybean	nucleus	36.66	35.42
KRH67021	Soybean	nucleus	34.16	35.4
KRH29679	Soybean	nucleus	36.41	34.93
PGSC0003DMT400065029	Potato	nucleus	34.16	34.51
AT1G51140.1	Thale cress	nucleus	31.17	32.98
Solyc01g086870.2.1	Tomato	nucleus	32.92	32.43
Bra018896.1-P	Field mustard	nucleus	28.93	32.13
CDY22828	Canola	nucleus	28.93	32.13
CDY25213	Canola	nucleus	28.93	31.87
Os01t0900800-01	Rice	nucleus	30.42	31.52
KRH20846	Soybean	nucleus	34.16	31.28
KRH27501	Soybean	nucleus	33.17	30.65
KRH10175	Soybean	nucleus	31.42	30.58
KRH43476	Soybean	nucleus	33.67	30.0
Solyc12g100140.1.1	Tomato	nucleus	33.17	29.56
PGSC0003DMT400056716	Potato	nucleus	32.17	29.25
Solyc11g056650.1.1	Tomato	nucleus	31.67	28.8
KRH13908	Soybean	extracellular, nucleus	32.42	28.51
PGSC0003DMT400061284	Potato	nucleus	33.17	27.2
Os04t0489600-02	Rice	nucleus	24.94	27.1
Os02t0603600-01	Rice	nucleus	11.72	26.55

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EntrezGene:4347431	ProteinID:BAF25443.1	ProteinID:BAT08713.1	ncoils:Coil
GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlantsGene:Os09g0487900
EnsemblPlants:Os09t0487900-01	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF55	UniProt:Q0J0Q4
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0000DD97A5	RefSeq:XP_015612612.1	InterPro:bHLH_dom	SEG:seg

Description

basic helix-loop-helix protein 143Helix-loop-helix DNA-binding domain containing protein. (Os09t0487900-01)

Coordinates

chr9:+:18814191..18817005

Molecular Weight (calculated)

41971.4 Da

IEP (calculated)

9.147

GRAVY (calculated)

-0.583

Length

401 amino acids

Sequence
(BLAST)

001: MYGAPVSKDL SLQPAGVRTP PQMSSPGLLR YRSAPSTLLG EVCGDFVLPG GGGGGGQLQL QLQQQRPGSP DHAADTVLAR FLAGHGGHDN KPPRPAAHFA
101: PPEDSMASHQ QQLMYQSHQQ QQQMASAMEG LYRTVSSGGT ESTAAAAGNS LLRQSSSPAG FLNHLTMDNG YGNMLRAGMG GGGGGGDPRL KGQLSFSSRQ
201: GSVMSQISEM GSEDEELAGG GGSPEAGSNG GGAARGGYGG GYAMGSSAWE EPSPPATSLL PDSSLPSKRP RDDLPRQLSL PAASKNSSKP PSSASAAASP
301: EMAAIEKFLQ FQDAVPCKIR AKRGCATHPR SIAERVRRTR ISERIRKLQE LVPNMEKQTN TADMLDLAVD YIKELQKQVK VLNDSRSSCT CSASKQKHFA
401: G

Best Arabidopsis Sequence Match ( AT2G42280.1 )
(BLAST)

001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.