Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g079050.1.1 | Tomato | nucleus | 96.05 | 96.05 |
| Zm00001d023444_P001 | Maize | cytosol | 7.37 | 59.57 |
| KRH71888 | Soybean | nucleus, plastid | 52.63 | 52.91 |
| KRH33007 | Soybean | nucleus, plastid | 52.11 | 51.56 |
| VIT_08s0007g07810.t01 | Wine grape | nucleus | 51.32 | 49.49 |
| Zm00001d051122_P001 | Maize | nucleus | 19.47 | 48.68 |
| Bra004678.1-P | Field mustard | nucleus, plastid | 40.53 | 47.24 |
| CDY53498 | Canola | nucleus, plastid | 40.0 | 46.77 |
| CDX79884 | Canola | nucleus, plastid | 40.0 | 46.48 |
| CDY14822 | Canola | nucleus | 41.84 | 46.09 |
| Bra016886.1-P | Field mustard | nucleus | 41.58 | 45.4 |
| CDY47961 | Canola | nucleus | 41.58 | 45.4 |
| AT2G42280.3 | Thale cress | nucleus | 42.11 | 44.44 |
| KRG95337 | Soybean | nucleus | 44.47 | 44.13 |
| KRH67021 | Soybean | nucleus | 44.21 | 43.41 |
| HORVU7Hr1G050530.1 | Barley | cytosol | 30.53 | 43.12 |
| HORVU5Hr1G073170.5 | Barley | cytosol, nucleus, plastid | 19.74 | 40.98 |
| Zm00001d006578_P001 | Maize | nucleus | 38.16 | 39.51 |
| TraesCS7A01G245800.1 | Wheat | nucleus | 39.74 | 39.43 |
| TraesCS7D01G244300.1 | Wheat | nucleus, plastid | 39.74 | 39.12 |
| TraesCS7B01G145800.1 | Wheat | nucleus, plastid | 39.74 | 39.02 |
| Os08t0506700-01 | Rice | nucleus | 40.79 | 38.85 |
| GSMUA_Achr5P22310_001 | Banana | nucleus | 38.95 | 38.24 |
| GSMUA_Achr7P20490_001 | Banana | nucleus | 35.26 | 38.18 |
| PGSC0003DMT400080418 | Potato | mitochondrion, nucleus | 25.26 | 36.92 |
| Zm00001d006022_P001 | Maize | nucleus, plastid | 39.21 | 36.7 |
| Zm00001d031441_P001 | Maize | nucleus | 36.58 | 36.58 |
| Zm00001d020932_P001 | Maize | nucleus | 39.21 | 36.52 |
| Zm00001d021748_P001 | Maize | plastid | 34.74 | 35.29 |
| Os09t0487900-01 | Rice | nucleus | 37.11 | 35.16 |
| GSMUA_Achr3P11110_001 | Banana | nucleus | 35.79 | 34.52 |
| PGSC0003DMT400065029 | Potato | nucleus | 36.05 | 34.51 |
| TraesCS5B01G264300.1 | Wheat | plastid | 36.32 | 33.66 |
| TraesCS5D01G272800.1 | Wheat | plastid | 36.58 | 33.49 |
| KXG35904 | Sorghum | nucleus, plastid | 38.68 | 33.11 |
| TraesCS5A01G264800.1 | Wheat | plastid | 35.53 | 33.01 |
| GSMUA_Achr9P27780_001 | Banana | nucleus | 35.79 | 32.77 |
| PGSC0003DMT400056716 | Potato | nucleus | 37.37 | 32.2 |
| PGSC0003DMT400016793 | Potato | nucleus, plastid | 29.21 | 31.9 |
| OQU80938 | Sorghum | nucleus | 38.68 | 31.61 |
| PGSC0003DMT400061284 | Potato | nucleus | 39.21 | 30.47 |
| HORVU2Hr1G073240.1 | Barley | cytosol | 12.11 | 28.05 |
| HORVU7Hr1G047180.1 | Barley | plastid | 16.58 | 25.1 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400021062 | EnsemblPlantsGene:PGSC0003DMG400008153 | EntrezGene:102582309 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF67 | PFAM:PF00010 | PFscan:PS50888 | PGSC:PGSC0003DMG400008153 | RefSeq:XP_006351215.2 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00029684A1 | UniProt:M1AEJ4 | MapMan:15.5.32 | : |
Description
Transcription factor bHLH130 [Source:PGSC_GENE;Acc:PGSC0003DMG400008153]
Coordinates
chr10:+:58669063..58672351
Molecular Weight (calculated)
41567.9 Da
IEP (calculated)
9.342
GRAVY (calculated)
-0.713
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSEFEKNQ NNSGLLRFRS APSSFLENFI DGVGNKGDMG TENKGLSSKF NLDGLNNQLV SQNSLDSKVF ANLSSNSQLP PQYPRQNSTA HMVGSMEGGG
101: GYRVMGSLLG SSNNHHQGQN KLASNLMRQN SSPAGLFSQL NSLNGYATLK GGAGGYRMAN GANGNSTPSS SRLKGHFGFS SVTPPSLGML SRISEVDNES
201: SIATSLDDDE KRGNGNSEPQ LYNMGFPFNS WSDPSQFQQT LTGHKRELDS EGNKLFANAQ IEELGNRPPI LSHHLSLPKT PADIAAMEKL LHFQDTIPCK
301: IRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTADMLDLA VEYIKGLQKQ YKVLTDCRAN CKCSAMQKPD
101: GYRVMGSLLG SSNNHHQGQN KLASNLMRQN SSPAGLFSQL NSLNGYATLK GGAGGYRMAN GANGNSTPSS SRLKGHFGFS SVTPPSLGML SRISEVDNES
201: SIATSLDDDE KRGNGNSEPQ LYNMGFPFNS WSDPSQFQQT LTGHKRELDS EGNKLFANAQ IEELGNRPPI LSHHLSLPKT PADIAAMEKL LHFQDTIPCK
301: IRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTADMLDLA VEYIKGLQKQ YKVLTDCRAN CKCSAMQKPD
001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.