Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G145800.1 | Wheat | nucleus, plastid | 83.27 | 57.88 |
| TraesCS7D01G244300.1 | Wheat | nucleus, plastid | 82.53 | 57.51 |
| TraesCS7A01G245800.1 | Wheat | nucleus | 81.41 | 57.18 |
| KRH38466 | Soybean | nucleus | 17.1 | 54.76 |
| Os08t0506700-01 | Rice | nucleus | 73.61 | 49.62 |
| HORVU5Hr1G073170.5 | Barley | cytosol, nucleus, plastid | 30.48 | 44.81 |
| Zm00001d031441_P001 | Maize | nucleus | 62.45 | 44.21 |
| VIT_06s0004g01740.t01 | Wine grape | nucleus | 47.58 | 43.1 |
| OQU80938 | Sorghum | nucleus | 70.63 | 40.86 |
| KRH71888 | Soybean | nucleus, plastid | 44.61 | 31.75 |
| VIT_08s0007g07810.t01 | Wine grape | nucleus | 45.72 | 31.22 |
| HORVU2Hr1G073240.1 | Barley | cytosol | 18.96 | 31.1 |
| KRH33007 | Soybean | nucleus, plastid | 44.24 | 30.99 |
| PGSC0003DMT400021062 | Potato | nucleus | 43.12 | 30.53 |
| KRH23160 | Soybean | nucleus | 46.1 | 30.39 |
| Bra004678.1-P | Field mustard | nucleus, plastid | 36.8 | 30.37 |
| CDX79884 | Canola | nucleus, plastid | 36.8 | 30.28 |
| KRH24679 | Soybean | nucleus | 46.47 | 30.12 |
| VIT_13s0064g01290.t01 | Wine grape | nucleus, plastid | 42.75 | 30.03 |
| KRH29679 | Soybean | nucleus | 46.47 | 29.9 |
| CDY53498 | Canola | nucleus, plastid | 36.06 | 29.85 |
| Solyc10g079050.1.1 | Tomato | nucleus | 42.01 | 29.74 |
| GSMUA_Achr3P11110_001 | Banana | nucleus | 42.75 | 29.19 |
| CDY47961 | Canola | nucleus | 37.55 | 29.02 |
| KRH67021 | Soybean | nucleus | 41.64 | 28.94 |
| Bra016886.1-P | Field mustard | nucleus | 37.17 | 28.74 |
| GSMUA_Achr9P27780_001 | Banana | nucleus | 44.24 | 28.67 |
| KRG95337 | Soybean | nucleus | 40.52 | 28.46 |
| CDY14822 | Canola | nucleus | 36.43 | 28.41 |
| AT2G42280.3 | Thale cress | nucleus | 37.17 | 27.78 |
| PGSC0003DMT400065029 | Potato | nucleus | 39.41 | 26.7 |
| HORVU6Hr1G054910.7 | Barley | nucleus | 31.23 | 25.93 |
| AT1G51140.1 | Thale cress | nucleus | 36.06 | 25.59 |
| Solyc01g086870.2.1 | Tomato | nucleus | 38.66 | 25.55 |
| Bra018896.1-P | Field mustard | nucleus | 33.46 | 24.93 |
| CDY25213 | Canola | nucleus | 33.09 | 24.45 |
| CDY22828 | Canola | nucleus | 32.71 | 24.38 |
| KRH10175 | Soybean | nucleus | 37.17 | 24.27 |
| HORVU7Hr1G047180.1 | Barley | plastid | 22.3 | 23.9 |
| HORVU3Hr1G089090.2 | Barley | nucleus | 31.97 | 22.75 |
| KRH20846 | Soybean | nucleus | 36.8 | 22.6 |
| KRH27501 | Soybean | nucleus | 36.43 | 22.58 |
| Solyc11g056650.1.1 | Tomato | nucleus | 36.8 | 22.45 |
| PGSC0003DMT400056716 | Potato | nucleus | 36.8 | 22.45 |
| Solyc12g100140.1.1 | Tomato | nucleus | 37.55 | 22.44 |
| PGSC0003DMT400061284 | Potato | nucleus | 38.66 | 21.27 |
| KRH43476 | Soybean | nucleus | 34.57 | 20.67 |
| KRH13908 | Soybean | extracellular, nucleus | 33.46 | 19.74 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G050530.1 | EnsemblPlantsGene:HORVU7Hr1G050530 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF69 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000B488CA1 | UniProt:A0A287WGD2 | MapMan:15.5.32 | : | : |
Description
No Description!
Coordinates
chrchr7H:+:182735703..182737264
Molecular Weight (calculated)
24575.9 Da
IEP (calculated)
8.623
GRAVY (calculated)
-0.586
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXDNGYESML RQGMGVGFRN GATNAAAAVD SSGSGGGRLK GQLSFSSRQG SLMSQISEMG
101: SEDLGGSSPE GAGGSRGYIP GYPMSSGWEE SSLMSENMSG MKRPRDSSEP AQNGLAHQFS LPKTSSEMAA IEKFLQFQDA VPCKIRAKRG CATHPRSIAE
201: RVRRTRISER IRKLQELVPN MDKQTNTADM LDLAVDYIKE LQEQVKVINE SRASCTCSAS KQHHQQYSG
101: SEDLGGSSPE GAGGSRGYIP GYPMSSGWEE SSLMSENMSG MKRPRDSSEP AQNGLAHQFS LPKTSSEMAA IEKFLQFQDA VPCKIRAKRG CATHPRSIAE
201: RVRRTRISER IRKLQELVPN MDKQTNTADM LDLAVDYIKE LQEQVKVINE SRASCTCSAS KQHHQQYSG
001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.