Factsheet for HORVU3Hr1G089090.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G388700.1	Wheat	nucleus	89.68	92.62
TraesCS3B01G426900.1	Wheat	nucleus	90.74	92.45
TraesCS3A01G395000.1	Wheat	nucleus	89.68	91.37
Zm00001d042482_P001	Maize	nucleus	62.17	64.92
Os01t0900800-01	Rice	nucleus	65.08	63.57
KXG33923	Sorghum	plastid	63.76	55.28
CDY70200	Canola	nucleus	13.76	51.49
GSMUA_Achr1P27710_001	Banana	nucleus	43.92	49.55
GSMUA_Achr8P01370_001	Banana	nucleus	42.06	49.23
KRG93108	Soybean	extracellular	33.86	44.76
VIT_05s0124g00240.t01	Wine grape	plastid	37.3	39.94
GSMUA_Achr8P32130_001	Banana	mitochondrion	44.18	39.57
PGSC0003DMT400016793	Potato	nucleus, plastid	35.98	39.08
CDY42800	Canola	nucleus	20.63	38.42
Bra000291.1-P	Field mustard	nucleus	20.63	38.42
CDX83499	Canola	nucleus	20.63	38.42
Solyc09g098110.2.1	Tomato	nucleus, plastid	34.92	36.97
HORVU6Hr1G054910.7	Barley	nucleus	31.22	36.42
AT2G43140.2	Thale cress	nucleus	28.57	34.95
Bra015456.1-P	Field mustard	nucleus, plastid	33.07	34.72
AT1G05805.1	Thale cress	nucleus, plastid	33.07	34.53
CDY51319	Canola	nucleus, plastid	32.8	34.44
Bra004748.1-P	Field mustard	nucleus	27.78	34.31
CDY30384	Canola	nucleus	27.51	33.88
CDY17944	Canola	nucleus	27.78	33.76
CDY10149	Canola	nucleus, plastid	31.22	33.52
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	16.14	33.33
Bra037732.1-P	Field mustard	nucleus	26.45	32.89
HORVU7Hr1G050530.1	Barley	cytosol	22.75	31.97
HORVU2Hr1G073240.1	Barley	cytosol	12.43	28.66
CDY66632	Canola	cytosol, nucleus, plastid	12.43	28.48
HORVU7Hr1G047180.1	Barley	plastid	16.4	24.7
CDY10155	Canola	nucleus, plastid	18.25	24.47

Protein Annotations

EMBL:AK369083	EnsemblPlants:HORVU3Hr1G089090.2	EnsemblPlantsGene:HORVU3Hr1G089090	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR16223	PANTHER:PTHR16223:SF33	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00020075AE	UniProt:F2DYW3	MapMan:15.5.32	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DYW3]

Coordinates

chrchr3H:-:627359207..627366427

Molecular Weight (calculated)

39879.7 Da

IEP (calculated)

7.681

GRAVY (calculated)

-0.612

Length

378 amino acids

Sequence
(BLAST)

001: MNRPTSAHHG GMPPPPQLAR YGSAPGSFLA ALADSVSRGG GEAPASHSHS HSQQQHHHQP VAAVVSRFFS GESSGLTSCE SSCRTADAPA ALQRAYGGSG
101: EIHVPPPALP QQQQQPGLLR HSSSPAGLLS RLMADPHGNG GGMGGARGGG MGGGYAHSHS HSQGGAGGNA DAMAAAQQRR LSSQWSFSRQ QDMMPHIAEM
201: GMAMPTPTPM PPADVGESIA TGHGSGDLSR SFSMSSWDDT NSNIIFSAPP GGKKAKVMAD GDDGMVTSFS NIDSQFGSSL DMPGMDDYLQ LQQDSVACRV
301: RAKRGCATHP RSIAERERRT RISKRLRRLQ DLVPNMDKQT NTSDMLDIAV DYIKVLQDQI EKLKQDQGNC SCSADQKC

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.