Factsheet for TraesCS3D01G388700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G426900.1	Wheat	nucleus	95.08	93.8
TraesCS3A01G395000.1	Wheat	nucleus	93.99	92.72
HORVU3Hr1G089090.2	Barley	nucleus	92.62	89.68
Zm00001d042482_P001	Maize	nucleus	63.93	64.64
Os01t0900800-01	Rice	nucleus	67.21	63.57
KXG33923	Sorghum	plastid	65.57	55.05
CDY70200	Canola	nucleus	14.21	51.49
GSMUA_Achr1P27710_001	Banana	nucleus	45.36	49.55
GSMUA_Achr8P01370_001	Banana	nucleus	43.44	49.23
KRG93108	Soybean	extracellular	35.25	45.1
VIT_05s0124g00240.t01	Wine grape	plastid	39.07	40.51
GSMUA_Achr8P32130_001	Banana	mitochondrion	45.63	39.57
Bra000291.1-P	Field mustard	nucleus	21.86	39.41
CDX83499	Canola	nucleus	21.86	39.41
TraesCS6D01G197500.1	Wheat	nucleus	33.06	39.29
PGSC0003DMT400016793	Potato	nucleus, plastid	37.16	39.08
CDY42800	Canola	nucleus	21.58	38.92
Solyc09g098110.2.1	Tomato	nucleus, plastid	36.07	36.97
AT2G43140.2	Thale cress	nucleus	30.33	35.92
Bra004748.1-P	Field mustard	nucleus	29.78	35.62
CDY17944	Canola	nucleus	29.78	35.05
Bra015456.1-P	Field mustard	nucleus, plastid	33.88	34.44
AT1G05805.1	Thale cress	nucleus, plastid	33.88	34.25
CDY51319	Canola	nucleus, plastid	33.61	34.17
CDY30384	Canola	nucleus	28.42	33.88
CDY10149	Canola	nucleus, plastid	31.97	33.24
Bra037732.1-P	Field mustard	nucleus	27.32	32.89
CDY66632	Canola	cytosol, nucleus, plastid	13.39	29.7
TraesCS7D01G244300.1	Wheat	nucleus, plastid	30.33	28.76
TraesCS5D01G272800.1	Wheat	plastid	29.23	25.78
CDY10155	Canola	nucleus, plastid	18.58	24.11

Protein Annotations

EnsemblPlants:TraesCS3D01G388700.1	EnsemblPlantsGene:TraesCS3D01G388700	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR16223	PANTHER:PTHR16223:SF33	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr3D:-:503993614..503996865

Molecular Weight (calculated)

38658.4 Da

IEP (calculated)

7.851

GRAVY (calculated)

-0.608

Length

366 amino acids

Sequence
(BLAST)

001: MNRPTPAHHR GMPPPPQLAR YGSAPGSFLA ALADSVARGG GGSDAPASQQ HQPVAAVVSR FFSGESSGLT SCESSCRTAD APPALQRAYG GSGEIHVPLP
101: QQQQQQQPGL LRHSSSPAGL LSRLMADPHG NGGMGGTRGG GMGSGYAHSH SQGGGNVDAM AAQQRRLSSQ WSFSRQQDMM PHIAEMGMAM PTPMPPAADA
201: GESIGTGHGG GSSDLSRSFS MSSWDDTNSN IIFSAPGGGG KKAKLMADGD DGMVTSFSNI DSQFGSSLDM PGMDDYLQLQ QDSVACRVRA KRGCATHPRS
301: IAERERRTRI SKRLRRLQDL VPNMDKQTNT SDMLDIAVDY IKVLQDQIEK LKQDQGNCSC SADQKC

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.