Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83499 | Canola | nucleus | 92.12 | 92.12 |
| CDY66632 | Canola | cytosol, nucleus, plastid | 59.11 | 72.73 |
| CDY70200 | Canola | nucleus | 33.99 | 68.32 |
| CDY17944 | Canola | nucleus | 84.24 | 54.98 |
| AT2G43140.2 | Thale cress | nucleus | 81.28 | 53.4 |
| CDY30384 | Canola | nucleus | 79.31 | 52.44 |
| KRG93108 | Soybean | extracellular | 51.23 | 36.36 |
| KXG26599 | Sorghum | nucleus | 35.96 | 36.14 |
| GSMUA_Achr6P21220_001 | Banana | vacuole | 43.35 | 31.54 |
| VIT_05s0124g00240.t01 | Wine grape | plastid | 53.69 | 30.88 |
| PGSC0003DMT400016793 | Potato | nucleus, plastid | 49.75 | 29.02 |
| CDY51319 | Canola | nucleus, plastid | 50.25 | 28.33 |
| CDY10149 | Canola | nucleus, plastid | 47.29 | 27.27 |
| Solyc09g098110.2.1 | Tomato | nucleus, plastid | 47.78 | 27.17 |
| TraesCS6B01G244800.1 | Wheat | nucleus | 39.9 | 26.73 |
| CDY28415 | Canola | nucleus | 31.53 | 26.34 |
| TraesCS6D01G197500.1 | Wheat | nucleus | 39.9 | 26.3 |
| GSMUA_Achr1P27710_001 | Banana | nucleus | 43.35 | 26.27 |
| CDY41870 | Canola | nucleus | 31.53 | 26.23 |
| Zm00001d017138_P001 | Maize | nucleus | 41.87 | 26.15 |
| CDX91761 | Canola | nucleus | 31.53 | 26.02 |
| TraesCS6A01G214900.1 | Wheat | nucleus | 39.9 | 25.8 |
| CDY69278 | Canola | nucleus | 30.54 | 25.62 |
| CDY61281 | Canola | nucleus | 31.53 | 25.5 |
| EES05388 | Sorghum | nucleus | 41.87 | 25.15 |
| GSMUA_Achr8P01370_001 | Banana | nucleus | 39.9 | 25.08 |
| HORVU6Hr1G054910.7 | Barley | nucleus | 38.92 | 24.38 |
| Os02t0603600-01 | Rice | nucleus | 20.69 | 23.73 |
| Os04t0489600-02 | Rice | nucleus | 41.38 | 22.76 |
| Zm00001d042482_P001 | Maize | nucleus | 39.41 | 22.1 |
| CDX79884 | Canola | nucleus, plastid | 34.98 | 21.71 |
| TraesCS3D01G388700.1 | Wheat | nucleus | 38.92 | 21.58 |
| TraesCS3B01G426900.1 | Wheat | nucleus | 39.41 | 21.56 |
| Os01t0900800-01 | Rice | nucleus | 39.9 | 20.93 |
| CDY53498 | Canola | nucleus, plastid | 33.5 | 20.92 |
| TraesCS3A01G395000.1 | Wheat | nucleus | 37.93 | 20.75 |
| HORVU3Hr1G089090.2 | Barley | nucleus | 38.42 | 20.63 |
| CDY47961 | Canola | nucleus | 34.98 | 20.4 |
| CDY14822 | Canola | nucleus | 33.99 | 20.0 |
| GSMUA_Achr8P32130_001 | Banana | mitochondrion | 40.89 | 19.67 |
| CDY22828 | Canola | nucleus | 33.0 | 18.56 |
| CDY25213 | Canola | nucleus | 33.0 | 18.41 |
| KXG33923 | Sorghum | plastid | 38.92 | 18.12 |
| CDY10155 | Canola | nucleus, plastid | 20.2 | 14.54 |
Protein Annotations
| EnsemblPlants:CDY42800 | EnsemblPlantsGene:GSBRNA2T00075475001 | Gene3D:4.10.280.10 | GO:A0A078HWE3 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF51 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:CDY42800 | ProteinID:CDY42800.1 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDC2F5 | UniProt:A0A078HWE3 | MapMan:15.5.32 | : |
Description
BnaC03g24060DBnaC03g24060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWE3]
Coordinates
chrLK032535:+:53533..55557
Molecular Weight (calculated)
22520.6 Da
IEP (calculated)
7.925
GRAVY (calculated)
-0.811
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGTGFPQG RPNGKYGGGG ERVPSRLKSE LRFSGGGSSG HQEHNSEVEA PLAAINCVAS TSMSFGNDHN NWDNSSSQIS FTIDEPGKRS KTTDFFTLET
101: QFSMPQTSME MSMINIPEDS VPWKVRAKRG CATHPRSIAE RERRTRISGK LKKLQELVPN MEKQTSYADM LDLAVEHIKG LQHHIESLEK GMERCTCGAC
201: KKQ
101: QFSMPQTSME MSMINIPEDS VPWKVRAKRG CATHPRSIAE RERRTRISGK LKKLQELVPN MEKQTSYADM LDLAVEHIKG LQHHIESLEK GMERCTCGAC
201: KKQ
001: MEEGTGFSLG RPNGGYGGGG EQGPSRLKSE LRFSSGSSSH QEHNSLPRIS EVEAAAAARN GVASSSMSFG NNRTNNWDNS SSHISFTIDQ PGKRSKNSDF
101: FTLETQYSMP QTTLEMATME NLMNIPEDSV PCRARAKRGF ATHPRSIAER ERRTRISGKL KKLQELVPNM DKQTSYADML DLAVEHIKGL QHQVESLEKG
201: MERCTCGACK KR
101: FTLETQYSMP QTTLEMATME NLMNIPEDSV PCRARAKRGF ATHPRSIAER ERRTRISGKL KKLQELVPNM DKQTSYADML DLAVEHIKGL QHQVESLEKG
201: MERCTCGACK KR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.