CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41870	Canola	nucleus	97.15	97.95
Bra036760.1-P	Field mustard	nucleus	91.87	94.56
CDY61281	Canola	nucleus	86.18	84.46
CDY28415	Canola	nucleus	82.11	83.13
CDY69278	Canola	nucleus	81.3	82.64
AT1G35460.1	Thale cress	nucleus	86.59	82.24
KRH44925	Soybean	nucleus	41.06	64.33
VIT_18s0041g00690.t01	Wine grape	mitochondrion, nucleus	58.94	57.77
Solyc06g065040.2.1	Tomato	nucleus	56.5	54.72
PGSC0003DMT400080418	Potato	mitochondrion, nucleus	55.28	52.31
CDY70200	Canola	nucleus	19.92	48.51
CDY42800	Canola	nucleus	26.02	31.53
CDX83499	Canola	nucleus	25.2	30.54
CDY53498	Canola	nucleus, plastid	35.37	26.77
CDX79884	Canola	nucleus, plastid	34.96	26.3
CDY14822	Canola	nucleus	36.18	25.8
CDY47961	Canola	nucleus	34.96	24.71
CDY17944	Canola	nucleus	29.67	23.47
CDY51319	Canola	nucleus, plastid	33.33	22.78
CDY10149	Canola	nucleus, plastid	32.11	22.44
CDY30384	Canola	nucleus	27.64	22.15
CDY25213	Canola	nucleus	31.71	21.43
CDY22828	Canola	nucleus	31.3	21.33
CDY66632	Canola	cytosol, nucleus, plastid	13.01	19.39
CDY10155	Canola	nucleus, plastid	13.41	11.7

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078DR23	EnsemblPlants:CDX91761	ProteinID:CDX91761	ProteinID:CDX91761.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00153299001
InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223
PANTHER:PTHR16223:SF104	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EC6F37	InterPro:bHLH_dom	SEG:seg

Description

BnaC08g06800D

Coordinates

chrLK031869:+:963611..965727

Molecular Weight (calculated)

27155.7 Da

IEP (calculated)

4.939

GRAVY (calculated)

-0.760

Length

246 amino acids

Sequence
(BLAST)

001: MQSTNGDGGE GGSGEGNRGG LSRIRSAPAT WIETLLVDDE EGDLKPNLCL TELLTGSSAR DSFEFPSSVE QGLYNHQGGG FHRQNSTPAD FLSGSGAGTD
101: GYFSNFGIPA NYDYLPPNVD ISPASKRSRE IEAQFSSQMK EEQMSGGVSG MMDINMDKLL EDSVPCRVRA KRGCATHPRS IAERVRRTRI SDRIRRLQEL
201: VPNMDKQTNT ADMLEEAVEY VKALQSKIQE LTEQQRRCIC KPKEEQ

Best Arabidopsis Sequence Match ( AT1G35460.1 )
(BLAST)

001: MQSTHISGGS SGGGGGGGGE VSRSGLSRIR SAPATWIETL LEEDEEEGLK PNLCLTELLT GNNNSGGVIT SRDDSFEFLS SVEQGLYNHH QGGGFHRQNS
101: SPADFLSGSG SGTDGYFSNF GIPANYDYLS TNVDISPTKR SRDMETQFSS QLKEEQMSGG ISGMMDMNMD KIFEDSVPCR VRAKRGCATH PRSIAERVRR
201: TRISDRIRRL QELVPNMDKQ TNTADMLEEA VEYVKALQSQ IQELTEQQKR CKCKPKEEQ

Arabidopsis Description

BHLH80Transcription factor bHLH80 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.