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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 3
  • plastid 4
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra004678.1-P Field mustard nucleus, plastid 96.02 96.32
CDY53498 Canola nucleus, plastid 93.58 94.15
CDY47961 Canola nucleus 80.12 75.29
CDY14822 Canola nucleus 79.2 75.07
AT2G42280.3 Thale cress nucleus 77.68 70.56
Zm00001d023444_P001 Maize cytosol 9.17 63.83
Zm00001d051122_P001 Maize nucleus 23.55 50.66
CDY70200 Canola nucleus 14.98 48.51
KRH71888 Soybean nucleus, plastid 49.85 43.12
VIT_08s0007g07810.t01 Wine grape nucleus 50.15 41.62
KRH33007 Soybean nucleus, plastid 48.62 41.41
HORVU5Hr1G073170.5 Barley cytosol, nucleus, plastid 22.94 40.98
Solyc10g079050.1.1 Tomato nucleus 46.79 40.26
PGSC0003DMT400021062 Potato nucleus 46.48 40.0
KRG95337 Soybean nucleus 44.65 38.12
KRH67021 Soybean nucleus 44.95 37.98
HORVU7Hr1G050530.1 Barley cytosol 30.28 36.8
Zm00001d006578_P001 Maize nucleus 41.28 36.78
CDY28415 Canola nucleus 26.91 36.21
CDY69278 Canola nucleus 26.61 35.95
CDY41870 Canola nucleus 26.3 35.25
CDY42800 Canola nucleus 21.71 34.98
CDX91761 Canola nucleus 26.3 34.96
Zm00001d031441_P001 Maize nucleus 40.37 34.74
CDY61281 Canola nucleus 26.61 34.66
CDX83499 Canola nucleus 21.41 34.48
TraesCS7A01G245800.1 Wheat nucleus 40.06 34.2
Os08t0506700-01 Rice nucleus 41.59 34.09
TraesCS7D01G244300.1 Wheat nucleus, plastid 40.06 33.94
GSMUA_Achr7P20490_001 Banana nucleus 36.09 33.62
TraesCS7B01G145800.1 Wheat nucleus, plastid 39.76 33.59
CDY25213 Canola nucleus 36.7 32.97
CDY22828 Canola nucleus 36.09 32.69
Zm00001d021748_P001 Maize plastid 37.0 32.35
Zm00001d006022_P001 Maize nucleus, plastid 39.76 32.02
GSMUA_Achr5P22310_001 Banana nucleus 37.31 31.52
Os09t0487900-01 Rice nucleus 38.23 31.17
Zm00001d020932_P001 Maize nucleus 38.53 30.88
GSMUA_Achr3P11110_001 Banana nucleus 37.0 30.71
CDY51319 Canola nucleus, plastid 33.33 30.28
TraesCS5B01G264300.1 Wheat plastid 37.92 30.24
TraesCS5D01G272800.1 Wheat plastid 38.23 30.12
HORVU2Hr1G073240.1 Barley cytosol 14.98 29.88
TraesCS5A01G264800.1 Wheat plastid 37.31 29.83
GSMUA_Achr9P27780_001 Banana nucleus 37.61 29.64
CDY10149 Canola nucleus, plastid 31.5 29.26
OQU80938 Sorghum nucleus 41.59 29.25
CDY17944 Canola nucleus 26.61 27.97
KXG35904 Sorghum nucleus, plastid 37.92 27.93
CDY30384 Canola nucleus 25.08 26.71
HORVU7Hr1G047180.1 Barley plastid 19.27 25.1
CDY66632 Canola cytosol, nucleus, plastid 12.54 24.85
CDY10155 Canola nucleus, plastid 15.29 17.73
Protein Annotations
MapMan:15.5.32Gene3D:4.10.280.10GO:A0A078CV19EnsemblPlants:CDX79884ProteinID:CDX79884ProteinID:CDX79884.1
ncoils:CoilGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0046983EnsemblPlantsGene:GSBRNA2T00132736001
InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638PFAM:PF00010PFscan:PS50888PANTHER:PTHR16223
PANTHER:PTHR16223:SF67SMART:SM00353SUPFAM:SSF47459UniParc:UPI0004EF388AInterPro:bHLH_domSEG:seg
Description
BnaA05g02720D
Coordinates
chrLK031819:-:694606..696255
Molecular Weight (calculated)
36811.1 Da
IEP (calculated)
7.222
GRAVY (calculated)
-0.826
Length
327 amino acids
Sequence
(BLAST)
001: MDSNTQNHLY DPNHVSSSSG SGLLRFRSAP SSVLAAFVDD NDKTVFNSNE FENKSRVSYA AAPPPQQEPS SFLGLPPHYP KQSNGMMMMN TIGLDQFLSM
101: NNHHTRPVES HLLRQSSSPA GMFTNEQNGY GSMRSYVGEE EEEEESPSHP NGLRRHSSLS SRPPSSLGML SQIPEIDSES VQYSHWNHPS TSFIDNLSSL
201: KRETEDDGKL FHGAQIMSHH LSLPKSASDM GSVDKYLQLQ DSVPCKVRAK RGCATHPRSI AERVRRTKIS ERMRKLQELV PNMDKQTNTS DMLDLAVDYI
301: KDLQRQYKIL NENRANCKCV NKEKNLI
Best Arabidopsis Sequence Match ( AT2G42280.1 )
(BLAST)
001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.