CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015456.1-P	Field mustard	nucleus, plastid	99.72	99.72
CDY10149	Canola	nucleus, plastid	92.5	94.6
CDY10155	Canola	nucleus, plastid	71.39	91.13
AT1G05805.1	Thale cress	nucleus, plastid	85.0	84.53
CDY70200	Canola	nucleus	16.67	59.41
KRG93108	Soybean	extracellular	41.94	52.8
CDX83499	Canola	nucleus	28.89	51.23
VIT_05s0124g00240.t01	Wine grape	plastid	49.72	50.71
CDY42800	Canola	nucleus	28.33	50.25
CDY17944	Canola	nucleus	38.33	44.37
CDY30384	Canola	nucleus	37.78	44.3
Solyc09g098110.2.1	Tomato	nucleus, plastid	43.89	44.26
PGSC0003DMT400016793	Potato	nucleus, plastid	41.94	43.39
GSMUA_Achr1P27710_001	Banana	nucleus	38.89	41.79
TraesCS6B01G244800.1	Wheat	nucleus	35.0	41.58
TraesCS6D01G197500.1	Wheat	nucleus	35.0	40.91
GSMUA_Achr6P21220_001	Banana	vacuole	31.39	40.5
TraesCS6A01G214900.1	Wheat	nucleus	35.0	40.13
GSMUA_Achr8P01370_001	Banana	nucleus	35.83	39.94
CDY66632	Canola	cytosol, nucleus, plastid	18.06	39.39
KXG26599	Sorghum	nucleus	21.94	39.11
HORVU6Hr1G054910.7	Barley	nucleus	33.89	37.65
Zm00001d042482_P001	Maize	nucleus	36.94	36.74
Zm00001d017138_P001	Maize	nucleus	32.5	36.0
CDY28415	Canola	nucleus	23.89	35.39
EES05388	Sorghum	nucleus	32.78	34.91
CDY69278	Canola	nucleus	23.33	34.71
CDY41870	Canola	nucleus	23.33	34.43
Os01t0900800-01	Rice	nucleus	36.94	34.37
CDY61281	Canola	nucleus	23.61	33.86
TraesCS3D01G388700.1	Wheat	nucleus	34.17	33.61
CDY53498	Canola	nucleus, plastid	30.28	33.54
CDX79884	Canola	nucleus, plastid	30.28	33.33
CDX91761	Canola	nucleus	22.78	33.33
TraesCS3B01G426900.1	Wheat	nucleus	34.17	33.15
TraesCS3A01G395000.1	Wheat	nucleus	34.17	33.15
HORVU3Hr1G089090.2	Barley	nucleus	34.44	32.8
GSMUA_Achr8P32130_001	Banana	mitochondrion	38.06	32.46
CDY47961	Canola	nucleus	31.11	32.18
CDY14822	Canola	nucleus	30.83	32.17
Os04t0489600-02	Rice	nucleus	32.78	31.98
KXG33923	Sorghum	plastid	36.67	30.28
Os02t0603600-01	Rice	nucleus	14.72	29.94
CDY25213	Canola	nucleus	28.06	27.75
CDY22828	Canola	nucleus	27.78	27.7

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	GO:A0A078IPH2	UniProt:A0A078IPH2	EnsemblPlants:CDY51319	ProteinID:CDY51319
ProteinID:CDY51319.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983
EnsemblPlantsGene:GSBRNA2T00003204001	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR16223	PANTHER:PTHR16223:SF51	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0004EF4997	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

BnaA10g03540DBnaA10g03540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IPH2]

Coordinates

chrLK032985:-:9103..12170

Molecular Weight (calculated)

38877.5 Da

IEP (calculated)

7.592

GRAVY (calculated)

-0.819

Length

360 amino acids

Sequence
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGGGAGLIRY GSAPGSLLNS MVDEVIGGSN ARDFNYPPPD NFLGDFFAGA DSSSLRSESM TCGVNSSDGQ KHLGSNNNNN
101: NNNKDLLMDR SYGGFNEISQ HKINNHVGGG SSSGSYSLAR QRSSPADFFS YLSGEKNSFS LNQPTSDYNQ QGGSNAGRGP SRLKSQLSFT SHDPLSRISE
201: VNETSVHDGS GHSFSAASFG AATDSWDDGS GSIGFTVTRP TKRPKDMNSG LFSQYSLPSD TSMNYMDNYM QLPEDSVPCK VRAKRGFATH PRSIAERERR
301: TRISGRLKKL QDLVPNMDKQ TSYSDMLDLA VQHIKGLQHQ LQTLKKEQEN CTCECSERPS

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.