Factsheet for Bra015456.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51319	Canola	nucleus, plastid	99.72	99.72
AT1G05805.1	Thale cress	nucleus, plastid	85.28	84.81
KRG93108	Soybean	extracellular	41.94	52.8
Bra000291.1-P	Field mustard	nucleus	28.89	51.23
VIT_05s0124g00240.t01	Wine grape	plastid	50.0	50.99
Bra004748.1-P	Field mustard	nucleus	38.33	45.1
Solyc09g098110.2.1	Tomato	nucleus, plastid	44.17	44.54
PGSC0003DMT400016793	Potato	nucleus, plastid	42.22	43.68
Bra037732.1-P	Field mustard	nucleus	35.56	42.11
GSMUA_Achr1P27710_001	Banana	nucleus	39.17	42.09
TraesCS6B01G244800.1	Wheat	nucleus	35.0	41.58
TraesCS6D01G197500.1	Wheat	nucleus	35.0	40.91
GSMUA_Achr6P21220_001	Banana	vacuole	31.11	40.14
TraesCS6A01G214900.1	Wheat	nucleus	35.0	40.13
GSMUA_Achr8P01370_001	Banana	nucleus	35.83	39.94
KXG26599	Sorghum	nucleus	21.94	39.11
HORVU6Hr1G054910.7	Barley	nucleus	33.89	37.65
Zm00001d042482_P001	Maize	nucleus	37.22	37.02
Zm00001d017138_P001	Maize	nucleus	32.5	36.0
Bra034421.1-P	Field mustard	nucleus	23.89	35.39
EES05388	Sorghum	nucleus	32.78	34.91
Os01t0900800-01	Rice	nucleus	37.22	34.63
Bra004678.1-P	Field mustard	nucleus, plastid	30.83	34.05
TraesCS3D01G388700.1	Wheat	nucleus	34.44	33.88
TraesCS3A01G395000.1	Wheat	nucleus	34.44	33.42
TraesCS3B01G426900.1	Wheat	nucleus	34.44	33.42
HORVU3Hr1G089090.2	Barley	nucleus	34.72	33.07
GSMUA_Achr8P32130_001	Banana	mitochondrion	38.33	32.7
Bra036760.1-P	Field mustard	nucleus	21.67	32.64
Bra016886.1-P	Field mustard	nucleus	31.39	32.47
Os04t0489600-02	Rice	nucleus	32.78	31.98
Bra028088.1-P	Field mustard	nucleus	23.06	31.2
KXG33923	Sorghum	plastid	36.94	30.5
Os02t0603600-01	Rice	nucleus	14.72	29.94
Bra018896.1-P	Field mustard	nucleus	28.33	28.25

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra015456	EnsemblPlants:Bra015456.1	EnsemblPlants:Bra015456.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0009987
GO:GO:0010119	GO:GO:0044212	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:M4DG33	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF51	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000254370A	InterPro:bHLH_dom	SEG:seg	:	:

Description

AT1G05805 (E=4e-137) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA10:-:1650615..1653342

Molecular Weight (calculated)

38859.5 Da

IEP (calculated)

7.592

GRAVY (calculated)

-0.814

Length

360 amino acids

Sequence
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGGGAGLIRY GSAPGSLLNS MVDEVIGGSN ARDFNYPPPD NFLGDFFAGA DSSSLRSESM TCGVNSSDGQ KHLGSNNNNN
101: NNNKDLLLDR SYGGFNEISQ HKINNHVGGG SSSGSYSLAR QRSSPADFFS YLSGEKNSFS LNQPTSDYNQ QGGSNAGRGP SRLKSQLSFT SHDPLSRISE
201: VNETSVHDGS GHSFSAASFG AATDSWDDGS GSIGFTVTRP TKRPKDMNSG LFSQYSLPSD TSMNYMDNYM QLPEDSVPCK VRAKRGFATH PRSIAERERR
301: TRISGRLKKL QDLVPNMDKQ TSYSDMLDLA VQHIKGLQHQ LQTLKKEQEN CTCECSERPS

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.