Factsheet for PGSC0003DMT400016793

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g098110.2.1	Tomato	nucleus, plastid	94.54	92.16
CDY70200	Canola	nucleus	18.68	64.36
VIT_05s0124g00240.t01	Wine grape	plastid	55.75	54.96
KRG93108	Soybean	extracellular	44.83	54.55
Bra000291.1-P	Field mustard	nucleus	29.6	50.74
CDX83499	Canola	nucleus	29.6	50.74
CDY42800	Canola	nucleus	29.02	49.75
KXG26599	Sorghum	nucleus	26.15	45.05
GSMUA_Achr1P27710_001	Banana	nucleus	42.53	44.18
AT1G05805.1	Thale cress	nucleus, plastid	45.11	43.37
Bra004748.1-P	Field mustard	nucleus	37.93	43.14
CDY17944	Canola	nucleus	38.22	42.77
AT2G43140.2	Thale cress	nucleus	37.93	42.72
Bra015456.1-P	Field mustard	nucleus, plastid	43.68	42.22
CDY51319	Canola	nucleus, plastid	43.39	41.94
CDY30384	Canola	nucleus	36.49	41.37
CDY10149	Canola	nucleus, plastid	41.38	40.91
GSMUA_Achr6P21220_001	Banana	vacuole	32.76	40.86
GSMUA_Achr8P01370_001	Banana	nucleus	37.64	40.56
Bra037732.1-P	Field mustard	nucleus	34.2	39.14
Zm00001d042482_P001	Maize	nucleus	39.94	38.4
CDY66632	Canola	cytosol, nucleus, plastid	18.1	38.18
TraesCS3D01G388700.1	Wheat	nucleus	39.08	37.16
TraesCS6B01G244800.1	Wheat	nucleus	31.9	36.63
Os01t0900800-01	Rice	nucleus	40.23	36.18
TraesCS3B01G426900.1	Wheat	nucleus	38.51	36.12
TraesCS6D01G197500.1	Wheat	nucleus	31.9	36.04
HORVU3Hr1G089090.2	Barley	nucleus	39.08	35.98
TraesCS3A01G395000.1	Wheat	nucleus	38.22	35.85
TraesCS6A01G214900.1	Wheat	nucleus	31.9	35.35
Zm00001d017138_P001	Maize	nucleus	32.76	35.08
GSMUA_Achr8P32130_001	Banana	mitochondrion	41.95	34.6
Os02t0603600-01	Rice	nucleus	17.53	34.46
EES05388	Sorghum	nucleus	33.33	34.32
HORVU6Hr1G054910.7	Barley	nucleus	31.9	34.26
Os04t0489600-02	Rice	nucleus	34.2	32.25
KXG33923	Sorghum	plastid	39.94	31.88
CDY10155	Canola	nucleus, plastid	25.57	31.56
PGSC0003DMT400080418	Potato	mitochondrion, nucleus	22.99	30.77
PGSC0003DMT400021062	Potato	nucleus	31.9	29.21
PGSC0003DMT400065029	Potato	nucleus	32.18	28.21
PGSC0003DMT400056716	Potato	nucleus	29.89	23.58
PGSC0003DMT400061284	Potato	nucleus	31.9	22.7

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150	GO:GO:0008152
GO:GO:0009719	GO:GO:0009987	GO:GO:0010629	GO:GO:0046983	GO:GO:0071215	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M1A858	PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400006569	PGSC:PGSC0003DMG400006569
EnsemblPlants:PGSC0003DMT400016793	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF51	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI00029573D6	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006569]

Coordinates

chr9:-:60821298..60830257

Molecular Weight (calculated)

36849.8 Da

IEP (calculated)

8.498

GRAVY (calculated)

-0.586

Length

348 amino acids

Sequence
(BLAST)

001: MSHTSTTAGG GGGLTRYGSA PGSFLTTAVE SVVNGNHEFA SHGSHHSNLG PSRFFPSNLA STSLNSESTS KAKEQSNLQR SIGFNDLTIG GGGGGGGGGG
101: GLPTASTTPL VRHSSSPARF LNQLATAAGD TGFSVSMGRG SYNSKGGGDS SRGITRLNSQ LSFTRQEALS QIAEENEDIE GTSIANGHRK STHSYASASS
201: FAMGSWEDNN SIMFSVTPGK RAKQISNDIV NGLDDGETQF QFGLSQTALE MASMDRLLHI PEDSVPCKIR AKRGCATHPR SIAERERRTR ISGKLKKLQD
301: LVPNMDKQTS YADMLDLAVQ HIRTLQDQVQ NLNTELENCK CGCKKSSQ

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.