Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY70200 | Canola | nucleus | 28.34 | 86.14 |
| CDY42800 | Canola | nucleus | 52.44 | 79.31 |
| CDX83499 | Canola | nucleus | 51.47 | 77.83 |
| CDY17944 | Canola | nucleus | 78.18 | 77.17 |
| AT2G43140.2 | Thale cress | nucleus | 76.55 | 76.05 |
| CDY66632 | Canola | cytosol, nucleus, plastid | 40.39 | 75.15 |
| KRG93108 | Soybean | extracellular | 42.35 | 45.45 |
| VIT_05s0124g00240.t01 | Wine grape | plastid | 45.6 | 39.66 |
| CDY51319 | Canola | nucleus, plastid | 44.3 | 37.78 |
| PGSC0003DMT400016793 | Potato | nucleus, plastid | 41.37 | 36.49 |
| CDY10149 | Canola | nucleus, plastid | 41.37 | 36.08 |
| KXG26599 | Sorghum | nucleus | 23.45 | 35.64 |
| Solyc09g098110.2.1 | Tomato | nucleus, plastid | 41.37 | 35.57 |
| GSMUA_Achr1P27710_001 | Banana | nucleus | 37.13 | 34.03 |
| GSMUA_Achr6P21220_001 | Banana | vacuole | 30.62 | 33.69 |
| TraesCS6B01G244800.1 | Wheat | nucleus | 33.22 | 33.66 |
| TraesCS6D01G197500.1 | Wheat | nucleus | 33.22 | 33.12 |
| TraesCS6A01G214900.1 | Wheat | nucleus | 33.22 | 32.48 |
| GSMUA_Achr8P01370_001 | Banana | nucleus | 33.88 | 32.2 |
| Zm00001d017138_P001 | Maize | nucleus | 32.9 | 31.08 |
| HORVU6Hr1G054910.7 | Barley | nucleus | 32.57 | 30.86 |
| EES05388 | Sorghum | nucleus | 33.55 | 30.47 |
| Zm00001d042482_P001 | Maize | nucleus | 35.18 | 29.83 |
| CDY28415 | Canola | nucleus | 22.8 | 28.81 |
| TraesCS3D01G388700.1 | Wheat | nucleus | 33.88 | 28.42 |
| CDY41870 | Canola | nucleus | 22.48 | 28.28 |
| Os01t0900800-01 | Rice | nucleus | 35.5 | 28.17 |
| CDY69278 | Canola | nucleus | 22.15 | 28.1 |
| TraesCS3B01G426900.1 | Wheat | nucleus | 33.55 | 27.76 |
| CDX91761 | Canola | nucleus | 22.15 | 27.64 |
| HORVU3Hr1G089090.2 | Barley | nucleus | 33.88 | 27.51 |
| CDY61281 | Canola | nucleus | 22.48 | 27.49 |
| TraesCS3A01G395000.1 | Wheat | nucleus | 32.9 | 27.22 |
| Os04t0489600-02 | Rice | nucleus | 32.57 | 27.1 |
| CDY10155 | Canola | nucleus, plastid | 24.76 | 26.95 |
| GSMUA_Achr8P32130_001 | Banana | mitochondrion | 36.16 | 26.3 |
| Os02t0603600-01 | Rice | nucleus | 14.98 | 25.99 |
| CDY14822 | Canola | nucleus | 28.34 | 25.22 |
| CDX79884 | Canola | nucleus, plastid | 26.71 | 25.08 |
| CDY47961 | Canola | nucleus | 28.34 | 25.0 |
| CDY53498 | Canola | nucleus, plastid | 26.06 | 24.62 |
| KXG33923 | Sorghum | plastid | 33.88 | 23.85 |
| CDY22828 | Canola | nucleus | 27.36 | 23.27 |
| CDY25213 | Canola | nucleus | 27.04 | 22.8 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078GZ07 | UniProt:A0A078GZ07 | EnsemblPlants:CDY30384 | ProteinID:CDY30384 |
| ProteinID:CDY30384.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00045077001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF51 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE81C4 | InterPro:bHLH_dom | SEG:seg |
Description
BnaA04g24850DBnaA04g24850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZ07]
Coordinates
chrLK032253:-:66091..69895
Molecular Weight (calculated)
33337.6 Da
IEP (calculated)
8.163
GRAVY (calculated)
-0.812
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRRSSSKST APDCGDAENN PYDETSGGFS SLGSQTHHNL PPPPRQQHNP NVVGFGHHLS GEPSTIGHSG ASSSSSSLFR HRSSPAGFYD QLLPTEPNGF
101: SLGQPNGGYG GGRGEERGLS RLKSEQRFSG GSSSNYQEHN SLPRISEVHA AAAAINSATS TSMSFGNDSN IWDRSSSQIS FTIDEPGKRS KTTDFFTLET
201: QFSMPQTSLE MARMESLMNI PEGSVPCRVR AKRGCATHPR SIAERDRRTR ISGKLKKLQE LVPNIDNQTS YAEMLDLAAE HIKGLQHQVE SLEKGMEGCT
301: CGACKKR
101: SLGQPNGGYG GGRGEERGLS RLKSEQRFSG GSSSNYQEHN SLPRISEVHA AAAAINSATS TSMSFGNDSN IWDRSSSQIS FTIDEPGKRS KTTDFFTLET
201: QFSMPQTSLE MARMESLMNI PEGSVPCRVR AKRGCATHPR SIAERDRRTR ISGKLKKLQE LVPNIDNQTS YAEMLDLAAE HIKGLQHQVE SLEKGMEGCT
301: CGACKKR
001: MYPPNSSKST AHDGGGDADT NQYDSAAGAT RDFSSLGPQT HHHPPPQRQQ QHQQNPNLVG HYLPGEPSSI GFDSNASSSS SLFRHRSSPA GFYDQHLPTD
101: PNGFSLGRPN GGYGGGGEQG PSRLKSELRF SSGSSSHQEH NSLPRISEVE AAAAARNGVA SSSMSFGNNR TNNWDNSSSH ISFTIDQPGK RSKNSDFFTL
201: ETQYSMPQTT LEMATMENLM NIPEDSVPCR ARAKRGFATH PRSIAERERR TRISGKLKKL QELVPNMDKQ TSYADMLDLA VEHIKGLQHQ VESLEKGMER
301: CTCGACKKR
101: PNGFSLGRPN GGYGGGGEQG PSRLKSELRF SSGSSSHQEH NSLPRISEVE AAAAARNGVA SSSMSFGNNR TNNWDNSSSH ISFTIDQPGK RSKNSDFFTL
201: ETQYSMPQTT LEMATMENLM NIPEDSVPCR ARAKRGFATH PRSIAERERR TRISGKLKKL QELVPNMDKQ TSYADMLDLA VEHIKGLQHQ VESLEKGMER
301: CTCGACKKR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.