Factsheet for HORVU6Hr1G054910.7

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G244800.1	Wheat	nucleus	86.42	92.41
TraesCS6D01G197500.1	Wheat	nucleus	85.8	90.26
TraesCS6A01G214900.1	Wheat	nucleus	86.42	89.17
Os02t0603600-01	Rice	nucleus	31.79	58.19
Zm00001d017138_P001	Maize	nucleus	57.41	57.23
CDY70200	Canola	nucleus	17.28	55.45
EES05388	Sorghum	nucleus	57.41	55.03
GSMUA_Achr6P21220_001	Banana	vacuole	34.26	39.78
KRG93108	Soybean	extracellular	34.57	39.16
CDY42800	Canola	nucleus	24.38	38.92
Bra000291.1-P	Field mustard	nucleus	24.07	38.42
CDX83499	Canola	nucleus	24.07	38.42
CDY10149	Canola	nucleus, plastid	37.04	34.09
Bra004748.1-P	Field mustard	nucleus	32.1	33.99
CDY51319	Canola	nucleus, plastid	37.65	33.89
Bra015456.1-P	Field mustard	nucleus, plastid	37.65	33.89
AT2G43140.2	Thale cress	nucleus	32.1	33.66
CDY17944	Canola	nucleus	32.1	33.44
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	18.83	33.33
VIT_05s0124g00240.t01	Wine grape	plastid	36.11	33.14
Solyc09g098110.2.1	Tomato	nucleus, plastid	36.11	32.77
AT1G05805.1	Thale cress	nucleus, plastid	36.42	32.6
CDY30384	Canola	nucleus	30.86	32.57
Bra037732.1-P	Field mustard	nucleus	29.94	31.91
PGSC0003DMT400016793	Potato	nucleus, plastid	34.26	31.9
HORVU7Hr1G050530.1	Barley	cytosol	25.93	31.23
HORVU3Hr1G089090.2	Barley	nucleus	36.42	31.22
CDY66632	Canola	cytosol, nucleus, plastid	14.81	29.09
HORVU2Hr1G073240.1	Barley	cytosol	11.73	23.17
CDY10155	Canola	nucleus, plastid	19.75	22.7
HORVU7Hr1G047180.1	Barley	plastid	15.74	20.32

Protein Annotations

EnsemblPlants:HORVU6Hr1G054910.7	EnsemblPlantsGene:HORVU6Hr1G054910	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF51	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0002954F84	UniProt:M0ULL8	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:348632724..348641827

Molecular Weight (calculated)

34200.9 Da

IEP (calculated)

9.549

GRAVY (calculated)

-0.563

Length

324 amino acids

Sequence
(BLAST)

001: MRRFLPAGAG EPSSSSSSGP HGKHEGSEAA AAAGGLRYGG GDISLGRGND LLHAQFRGGE GEMKDDGADM LARHSSSPAG FFSNLMVDDG YHGSRGAGVA
101: GGSGEAHRNT SSSTKMKSQL SFTSGGPQTA AHLSRISEGA SLFPGADVVR AAAHSGGEHP VSRSFSASGS SGGFSIVGPW DESREIIGTL DLGGYESQFS
201: GMASSSSLEL AGMDKYMQAQ QQQDQVGFKV RAKRGCATHP RSIAERERRT RISEKLRKLQ DLVPNMDKQT STSDMLDLAV EHIRGLQSQL QVCRRRATSV
301: IRRVNGCGHG MLTRAWSSDR LCRS

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.