CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 5
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 22945350

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70200	Canola	nucleus	23.43	66.34
Bra000291.1-P	Field mustard	nucleus	36.71	51.72
CDX83499	Canola	nucleus	36.71	51.72
VIT_05s0124g00240.t01	Wine grape	plastid	63.29	51.27
CDY42800	Canola	nucleus	36.36	51.23
Solyc09g098110.2.1	Tomato	nucleus, plastid	56.64	45.38
PGSC0003DMT400016793	Potato	nucleus, plastid	54.55	44.83
KRH44925	Soybean	nucleus	24.13	43.95
Bra004748.1-P	Field mustard	nucleus	46.85	43.79
AT2G43140.2	Thale cress	nucleus	46.85	43.37
CDY17944	Canola	nucleus	46.85	43.09
GSMUA_Achr1P27710_001	Banana	nucleus	50.35	42.99
AT1G05805.1	Thale cress	nucleus, plastid	53.85	42.54
CDY30384	Canola	nucleus	45.45	42.35
CDY51319	Canola	nucleus, plastid	52.8	41.94
Bra015456.1-P	Field mustard	nucleus, plastid	52.8	41.94
KRH38466	Soybean	nucleus	12.24	41.67
GSMUA_Achr8P01370_001	Banana	nucleus	46.85	41.49
KXG26599	Sorghum	nucleus	29.02	41.09
CDY10149	Canola	nucleus, plastid	49.65	40.34
GSMUA_Achr6P21220_001	Banana	vacuole	39.16	40.14
Bra037732.1-P	Field mustard	nucleus	42.31	39.8
TraesCS6B01G244800.1	Wheat	nucleus	40.56	38.28
TraesCS6D01G197500.1	Wheat	nucleus	40.56	37.66
TraesCS6A01G214900.1	Wheat	nucleus	40.56	36.94
CDY66632	Canola	cytosol, nucleus, plastid	20.98	36.36
TraesCS3D01G388700.1	Wheat	nucleus	45.1	35.25
Os01t0900800-01	Rice	nucleus	47.2	34.88
GSMUA_Achr8P32130_001	Banana	mitochondrion	51.4	34.83
HORVU6Hr1G054910.7	Barley	nucleus	39.16	34.57
Zm00001d042482_P001	Maize	nucleus	43.71	34.53
TraesCS3B01G426900.1	Wheat	nucleus	44.76	34.5
TraesCS3A01G395000.1	Wheat	nucleus	44.41	34.23
HORVU3Hr1G089090.2	Barley	nucleus	44.76	33.86
EES05388	Sorghum	nucleus	39.51	33.43
Zm00001d017138_P001	Maize	nucleus	37.76	33.23
Os04t0489600-02	Rice	nucleus	38.81	30.08
KRH71888	Soybean	nucleus, plastid	39.51	29.89
KXG33923	Sorghum	plastid	45.1	29.59
Os02t0603600-01	Rice	nucleus	18.18	29.38
KRH33007	Soybean	nucleus, plastid	39.16	29.17
CDY10155	Canola	nucleus, plastid	28.67	29.08
KRG95337	Soybean	nucleus	35.66	26.63
KRH24679	Soybean	nucleus	38.11	26.27
KRH23160	Soybean	nucleus	37.06	25.98
KRH67021	Soybean	nucleus	34.97	25.84
KRH29679	Soybean	nucleus	37.76	25.84
KRH20846	Soybean	nucleus	39.51	25.8
KRH27501	Soybean	nucleus	38.11	25.12
KRH43476	Soybean	nucleus	37.06	23.56
KRH13908	Soybean	extracellular, nucleus	37.41	23.46
KRH10175	Soybean	nucleus	31.47	21.84

Protein Annotations

EntrezGene:100819319	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02012781	EnsemblPlantsGene:GLYMA_20G248100	GO:GO:0001046
GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009987
GO:GO:0010629	GO:GO:0045944	GO:GO:0046983	GO:GO:0071215	InterPro:HLH_DNA-bd_sf	UniProt:I1NJD6
InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRG93108	ProteinID:KRG93108	ProteinID:KRG93108.1	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF51	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002262CD6
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:47744092..47746937

Molecular Weight (calculated)

31023.2 Da

IEP (calculated)

8.884

GRAVY (calculated)

-0.629

Length

286 amino acids

Sequence
(BLAST)

001: MYPSSSSSSS SSSQSMTQAG LTRYGSAPGS LLTSTVDSLI GGSRPSPYFS GESSESPCKE QRSFHNHPPS FASSLLRQKS SPAGFLSHLS NHHGVGFTIT
101: PGGLSNSNSN SNCSLLKSQL SFTHESLSNT VNVDPSSTTF GMDPWDNNSI AFSATSTKRS KTNTNDPDIL HSLNSALESQ FNLPHTSLEM STVDKLLHIP
201: EDSVPCKIRA KRGCATHPRS IAERERRTRI SGKLKKLQDL VPNMDKQTSY ADMLDLAVQH IKGLQTQVQK LHKEMENCTC GCKQSK

Best Arabidopsis Sequence Match ( AT1G05805.1 )
(BLAST)

001: MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNSVVDE VIGGGSSNAR DFTGYQPSSD NFIGNFFTGA ADSSSLRSDS TTCGVNNSSD GQKQLGNNNN
101: NNSNKDIFLD RSYGGFNEIS QQHKSNDIGG GNSSGSYSLA RQRSSPADFF TYLASDKNNF SLNQPTSDYS PQGGSNGGRG HSRLKSQLSF TNHDSLARIN
201: EVNETPVHDG SGHSFSAASF GAATTDSWDD GSGSIGFTVT RPSKRSKDMD SGLFSQYSLP SDTSMNYMDN FMQLPEDSVP CKIRAKRGCA THPRSIAERE
301: RRTRISGKLK KLQDLVPNMD KQTSYSDMLD LAVQHIKGLQ HQLQNLKKDQ ENCTCGCSEK PS

Arabidopsis Description

BHLH128Transcription factor bHLH128 [Source:UniProtKB/Swiss-Prot;Acc:Q8H102]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.