CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20846	Soybean	nucleus	91.24	90.41
KRH43476	Soybean	nucleus	62.44	60.22
KRH13908	Soybean	extracellular, nucleus	62.21	59.21
Zm00001d023444_P001	Maize	cytosol	6.22	57.45
Zm00001d051122_P001	Maize	nucleus	15.21	43.42
KRH44925	Soybean	nucleus	15.67	43.31
VIT_13s0064g01290.t01	Wine grape	nucleus, plastid	38.02	43.08
KRH38466	Soybean	nucleus	8.29	42.86
PGSC0003DMT400065029	Potato	nucleus	35.94	39.29
Solyc01g086870.2.1	Tomato	nucleus	36.18	38.57
KRG93108	Soybean	extracellular	25.12	38.11
KRH33007	Soybean	nucleus, plastid	33.41	37.76
KRH71888	Soybean	nucleus, plastid	32.49	37.3
HORVU7Hr1G050530.1	Barley	cytosol	22.58	36.43
Zm00001d006578_P001	Maize	nucleus	30.65	36.24
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	15.21	36.07
GSMUA_Achr7P20490_001	Banana	nucleus	28.8	35.61
TraesCS7A01G245800.1	Wheat	nucleus	31.11	35.25
KRH67021	Soybean	nucleus	31.34	35.14
TraesCS7D01G244300.1	Wheat	nucleus, plastid	31.11	34.97
TraesCS7B01G145800.1	Wheat	nucleus, plastid	31.11	34.88
KRG95337	Soybean	nucleus	30.65	34.73
GSMUA_Achr5P22310_001	Banana	nucleus	30.88	34.63
Os08t0506700-01	Rice	nucleus	31.57	34.34
KRH24679	Soybean	nucleus	32.49	33.98
KRH29679	Soybean	nucleus	32.72	33.97
Zm00001d031441_P001	Maize	nucleus	29.72	33.95
KRH23160	Soybean	nucleus	31.8	33.82
GSMUA_Achr9P27780_001	Banana	nucleus	31.8	33.25
GSMUA_Achr3P11110_001	Banana	nucleus	30.18	33.25
Os09t0487900-01	Rice	nucleus	30.65	33.17
Zm00001d006022_P001	Maize	nucleus, plastid	30.88	33.0
Zm00001d020932_P001	Maize	nucleus	30.88	32.84
Zm00001d021748_P001	Maize	plastid	28.11	32.62
TraesCS5B01G264300.1	Wheat	plastid	29.95	31.71
TraesCS5D01G272800.1	Wheat	plastid	29.95	31.33
TraesCS5A01G264800.1	Wheat	plastid	29.49	31.3
KXG35904	Sorghum	nucleus, plastid	30.88	30.18
OQU80938	Sorghum	nucleus	31.8	29.68
KRH10175	Soybean	nucleus	26.73	28.16
HORVU2Hr1G073240.1	Barley	cytosol	10.37	27.44
HORVU7Hr1G047180.1	Barley	plastid	14.06	24.3

Protein Annotations

EntrezGene:100797629	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02007812	EnsemblPlantsGene:GLYMA_12G238700	GO:GO:0001046
GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1LVE9	InterPro:IPR011598	InterPro:IPR036638	EnsemblPlants:KRH27501
ProteinID:KRH27501	ProteinID:KRH27501.1	ProteinID:KRH27502.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223
PANTHER:PTHR16223:SF69	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000233D17D	InterPro:bHLH_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:39783084..39787404

Molecular Weight (calculated)

47716.5 Da

IEP (calculated)

9.305

GRAVY (calculated)

-0.753

Length

434 amino acids

Sequence
(BLAST)

001: MSIVYSHAVK YSQGETRMNP EMDSNIGQHC HQQNSGLMRY RSAPSSLLTS LANNNNINNN TTTNGCVNGK AFRSVHNHHQ QQRYPPSTSS EMETMLAKLI
101: SSNNSEPLQV KEEAVASVSQ PPQQHNGYSY GSSPQMMYQT QQIQGLPMPN GSLGNAFDGS FSAVNSLASQ NSTQPRLGAS TNCNNLIRQK SSPAGFFSNY
201: SVDNAMRDVA SFRGCDVSNG QAITSSSGLH GGTLNLSSRP SSCSTRMPQI AENGNEGVEG NYVESRNLRN DNINSTKCYM PSFTTDFWDG SSFSPRTASN
301: NGEISFSTSN AMDIQGEDFG YQKVGLTHHS SLPGSSSRVA TMEKFYQIQG SVPCKIRAKR GFATHPRSIA ERERRTRISA RIKKLQDLFP KTDKQTSTAD
401: MLDLAVEYIK DLQKQVKMLR DTRAKCTCTS NQKH

Best Arabidopsis Sequence Match ( AT2G42280.1 )
(BLAST)

001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.