Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d023444_P001 | Maize | cytosol | 12.26 | 95.74 |
| Zm00001d021748_P001 | Maize | plastid | 85.01 | 83.42 |
| Zm00001d031441_P001 | Maize | nucleus | 73.57 | 71.05 |
| Zm00001d051122_P001 | Maize | nucleus | 25.61 | 61.84 |
| Zm00001d020932_P001 | Maize | nucleus | 65.94 | 59.31 |
| Zm00001d006022_P001 | Maize | nucleus, plastid | 64.31 | 58.13 |
| KRH38466 | Soybean | nucleus | 11.72 | 51.19 |
| VIT_06s0004g01740.t01 | Wine grape | nucleus | 38.42 | 47.47 |
| CDY53498 | Canola | nucleus, plastid | 37.06 | 41.85 |
| Bra004678.1-P | Field mustard | nucleus, plastid | 36.78 | 41.41 |
| CDX79884 | Canola | nucleus, plastid | 36.78 | 41.28 |
| VIT_08s0007g07810.t01 | Wine grape | nucleus | 43.6 | 40.61 |
| KRH23160 | Soybean | nucleus | 44.41 | 39.95 |
| CDY14822 | Canola | nucleus | 37.33 | 39.71 |
| CDY47961 | Canola | nucleus | 37.33 | 39.37 |
| Bra016886.1-P | Field mustard | nucleus | 37.06 | 39.08 |
| AT2G42280.3 | Thale cress | nucleus | 38.15 | 38.89 |
| KRH71888 | Soybean | nucleus, plastid | 39.78 | 38.62 |
| KRH29679 | Soybean | nucleus | 43.87 | 38.52 |
| GSMUA_Achr3P11110_001 | Banana | nucleus | 41.14 | 38.32 |
| KRH24679 | Soybean | nucleus | 43.32 | 38.31 |
| PGSC0003DMT400021062 | Potato | nucleus | 39.51 | 38.16 |
| Solyc10g079050.1.1 | Tomato | nucleus | 38.96 | 37.63 |
| VIT_13s0064g01290.t01 | Wine grape | nucleus, plastid | 38.96 | 37.34 |
| KRH33007 | Soybean | nucleus, plastid | 38.69 | 36.98 |
| GSMUA_Achr9P27780_001 | Banana | nucleus | 40.87 | 36.14 |
| PGSC0003DMT400065029 | Potato | nucleus | 38.42 | 35.52 |
| KRH67021 | Soybean | nucleus | 37.33 | 35.4 |
| KRG95337 | Soybean | nucleus | 35.97 | 34.46 |
| KRH10175 | Soybean | nucleus | 37.87 | 33.74 |
| Solyc01g086870.2.1 | Tomato | nucleus | 36.78 | 33.17 |
| Bra018896.1-P | Field mustard | nucleus | 31.88 | 32.41 |
| AT1G51140.1 | Thale cress | nucleus | 33.24 | 32.19 |
| Zm00001d042482_P001 | Maize | nucleus | 31.61 | 32.04 |
| CDY25213 | Canola | nucleus | 31.61 | 31.87 |
| CDY22828 | Canola | nucleus | 31.34 | 31.86 |
| HORVU2Hr1G073240.1 | Barley | cytosol | 14.17 | 31.71 |
| Solyc11g056650.1.1 | Tomato | nucleus | 37.87 | 31.52 |
| Zm00001d017138_P001 | Maize | nucleus | 27.79 | 31.38 |
| Solyc12g100140.1.1 | Tomato | nucleus | 38.15 | 31.11 |
| PGSC0003DMT400056716 | Potato | nucleus | 37.33 | 31.07 |
| KRH27501 | Soybean | nucleus | 36.24 | 30.65 |
| KRH20846 | Soybean | nucleus | 36.24 | 30.37 |
| KRH43476 | Soybean | nucleus | 35.15 | 28.67 |
| PGSC0003DMT400061284 | Potato | nucleus | 38.15 | 28.63 |
| KRH13908 | Soybean | extracellular, nucleus | 34.6 | 27.85 |
| HORVU7Hr1G047180.1 | Barley | plastid | 18.53 | 27.09 |
Protein Annotations
| EntrezGene:103647749 | MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A1D6EY17 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| ProteinID:ONM24300.1 | ProteinID:ONM24302.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF55 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000220CEEC | EnsemblPlantsGene:Zm00001d006578 | EnsemblPlants:Zm00001d006578_P001 | EnsemblPlants:Zm00001d006578_T001 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
bHLH-transcription factor 80Transcription factor bHLH130
Coordinates
chr2:-:211375734..211378716
Molecular Weight (calculated)
39535.6 Da
IEP (calculated)
7.897
GRAVY (calculated)
-0.563
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MYGSPVSKDL NVPVQPPMIS SGLLRYRSAP STVLGDLCED FLPSASGAAS PDNVFSRFLA EHHTRDDKPS PPPPAAVHFP SEADMASQQQ QQMMFHSHHH
101: QQQQQMVGAK SGLYRTVSSD IETAAAVGTG GASNLIRQSS SPAGFLDHLN MDNGYGAMLR AGMATADSLA GSGSRLKGQL SFSSRQGSLM SQISEMDSEE
201: VGGSSPEAAG GGRGYIPGYP MGSGSGWEDS SALMSDNLSG LKRPRDSSEP GQSRITHQFS LPKTSSEMAS IDKFLQFQDA VPCKIRAKRG CATHPRSIAE
301: RVRRTKISER IRKLQELVPN MDKQTNTSDM LDLAVDYIKE LQKQVKVLKE TQANCTCPAS KSQQHSC
101: QQQQQMVGAK SGLYRTVSSD IETAAAVGTG GASNLIRQSS SPAGFLDHLN MDNGYGAMLR AGMATADSLA GSGSRLKGQL SFSSRQGSLM SQISEMDSEE
201: VGGSSPEAAG GGRGYIPGYP MGSGSGWEDS SALMSDNLSG LKRPRDSSEP GQSRITHQFS LPKTSSEMAS IDKFLQFQDA VPCKIRAKRG CATHPRSIAE
301: RVRRTKISER IRKLQELVPN MDKQTNTSDM LDLAVDYIKE LQKQVKVLKE TQANCTCPAS KSQQHSC
001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.