Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra018896.1-P | Field mustard | nucleus | 81.27 | 85.32 |
CDY25213 | Canola | nucleus | 81.79 | 85.16 |
CDY22828 | Canola | nucleus | 80.74 | 84.76 |
Zm00001d023444_P001 | Maize | cytosol | 7.12 | 57.45 |
Zm00001d051122_P001 | Maize | nucleus | 17.94 | 44.74 |
VIT_06s0004g01740.t01 | Wine grape | nucleus | 33.25 | 42.42 |
KRH38466 | Soybean | nucleus | 9.23 | 41.67 |
HORVU5Hr1G073170.5 | Barley | cytosol, nucleus, plastid | 18.73 | 38.8 |
HORVU7Hr1G050530.1 | Barley | cytosol | 25.59 | 36.06 |
KRH23160 | Soybean | nucleus | 38.26 | 35.54 |
KRH29679 | Soybean | nucleus | 38.79 | 35.17 |
GSMUA_Achr5P22310_001 | Banana | nucleus | 35.36 | 34.63 |
GSMUA_Achr7P20490_001 | Banana | nucleus | 31.93 | 34.47 |
KRH24679 | Soybean | nucleus | 37.47 | 34.22 |
AT2G42280.3 | Thale cress | nucleus | 32.45 | 34.17 |
Zm00001d031441_P001 | Maize | nucleus | 33.77 | 33.68 |
TraesCS7A01G245800.1 | Wheat | nucleus | 34.04 | 33.68 |
TraesCS7D01G244300.1 | Wheat | nucleus, plastid | 34.04 | 33.42 |
TraesCS7B01G145800.1 | Wheat | nucleus, plastid | 34.04 | 33.33 |
Zm00001d006578_P001 | Maize | nucleus | 32.19 | 33.24 |
Os08t0506700-01 | Rice | nucleus | 34.04 | 32.33 |
Zm00001d020932_P001 | Maize | nucleus | 34.3 | 31.86 |
Zm00001d006022_P001 | Maize | nucleus, plastid | 33.77 | 31.53 |
GSMUA_Achr3P11110_001 | Banana | nucleus | 32.72 | 31.47 |
AT1G35460.1 | Thale cress | nucleus | 21.37 | 31.27 |
Os09t0487900-01 | Rice | nucleus | 32.98 | 31.17 |
KRH10175 | Soybean | nucleus | 32.98 | 30.34 |
TraesCS5B01G264300.1 | Wheat | plastid | 32.45 | 30.0 |
Zm00001d021748_P001 | Maize | plastid | 29.55 | 29.95 |
TraesCS5D01G272800.1 | Wheat | plastid | 32.72 | 29.88 |
TraesCS5A01G264800.1 | Wheat | plastid | 32.19 | 29.83 |
AT4G09180.1 | Thale cress | nucleus | 20.58 | 29.77 |
Solyc12g100140.1.1 | Tomato | nucleus | 35.09 | 29.56 |
AT2G43140.2 | Thale cress | nucleus | 24.01 | 29.45 |
AT1G05805.1 | Thale cress | nucleus, plastid | 27.97 | 29.28 |
OQU80938 | Sorghum | nucleus | 34.83 | 28.39 |
KXG35904 | Sorghum | nucleus, plastid | 33.25 | 28.38 |
GSMUA_Achr9P27780_001 | Banana | nucleus | 30.87 | 28.19 |
PGSC0003DMT400056716 | Potato | nucleus | 32.72 | 28.12 |
Solyc11g056650.1.1 | Tomato | nucleus | 32.19 | 27.66 |
PGSC0003DMT400061284 | Potato | nucleus | 34.83 | 26.99 |
HORVU2Hr1G073240.1 | Barley | cytosol | 11.08 | 25.61 |
HORVU7Hr1G047180.1 | Barley | plastid | 14.51 | 21.91 |
Protein Annotations
MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:841537 | UniProt:A0A178WHN7 | ProteinID:AAG50543.1 | ProteinID:AEE32626.1 |
ArrayExpress:AT1G51140 | EnsemblPlantsGene:AT1G51140 | RefSeq:AT1G51140 | TAIR:AT1G51140 | RefSeq:AT1G51140-TAIR-G | EnsemblPlants:AT1G51140.1 |
TAIR:AT1G51140.1 | EMBL:AY034941 | EMBL:AY063120 | Unigene:At.19155 | ncoils:Coil | GO:GO:0000003 |
GO:GO:0001046 | GO:GO:0001228 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006366 | GO:GO:0007275 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010119 |
GO:GO:0042335 | GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048573 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 |
InterPro:IPR036638 | RefSeq:NP_564583.1 | ProteinID:OAP16612.1 | PFAM:PF00010 | PO:PO:0000013 | PO:PO:0000037 |
PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50888 | PANTHER:PTHR16223 |
PANTHER:PTHR16223:SF29 | UniProt:Q9C690 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00000AA2A6 | InterPro:bHLH_dom |
SEG:seg | : | : | : | : | : |
Description
BHLH122Transcription factor bHLH122 [Source:UniProtKB/Swiss-Prot;Acc:Q9C690]
Coordinates
chr1:-:18943447..18945812
Molecular Weight (calculated)
41718.7 Da
IEP (calculated)
6.913
GRAVY (calculated)
-0.679
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MESEFQQHHF LLHDHQHQRP RNSGLIRYQS APSSYFSSFG ESIEEFLDRP TSPETERILS GFLQTTDTSD NVDSFLHHTF NSDGTEKKPP EVKTEDEDAE
101: IPVTATATAM EVVVSGDGEI SVNPEVSIGY VASVSRNKRP REKDDRTPVN NLARHNSSPA GLFSSIDVET AYAAVMKSMG GFGGSNVMST SNTEASSLTP
201: RSKLLPPTSR AMSPISEVDV KPGFSSRLPP RTLSGGFNRS FGNEGSASSK LTALARTQSG GLDQYKTKDE DSASRRPPLA HHMSLPKSLS DIEQLLSDSI
301: PCKIRAKRGC ATHPRSIAER VRRTKISERM RKLQDLVPNM DTQTNTADML DLAVQYIKDL QEQVKALEES RARCRCSSA
101: IPVTATATAM EVVVSGDGEI SVNPEVSIGY VASVSRNKRP REKDDRTPVN NLARHNSSPA GLFSSIDVET AYAAVMKSMG GFGGSNVMST SNTEASSLTP
201: RSKLLPPTSR AMSPISEVDV KPGFSSRLPP RTLSGGFNRS FGNEGSASSK LTALARTQSG GLDQYKTKDE DSASRRPPLA HHMSLPKSLS DIEQLLSDSI
301: PCKIRAKRGC ATHPRSIAER VRRTKISERM RKLQDLVPNM DTQTNTADML DLAVQYIKDL QEQVKALEES RARCRCSSA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.