Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400056716 | Potato | nucleus | 89.12 | 89.12 |
| Zm00001d023444_P001 | Maize | cytosol | 6.12 | 57.45 |
| Solyc12g100140.1.1 | Tomato | nucleus | 55.78 | 54.67 |
| VIT_06s0004g01740.t01 | Wine grape | nucleus | 31.97 | 47.47 |
| Zm00001d051122_P001 | Maize | nucleus | 14.29 | 41.45 |
| KRH38466 | Soybean | nucleus | 7.71 | 40.48 |
| KRH23160 | Soybean | nucleus | 35.6 | 38.48 |
| Solyc10g079050.1.1 | Tomato | nucleus | 32.65 | 37.89 |
| Zm00001d006578_P001 | Maize | nucleus | 31.52 | 37.87 |
| KRH29679 | Soybean | nucleus | 34.92 | 36.84 |
| HORVU7Hr1G050530.1 | Barley | cytosol | 22.45 | 36.8 |
| HORVU5Hr1G073170.5 | Barley | cytosol, nucleus, plastid | 15.19 | 36.61 |
| KRH24679 | Soybean | nucleus | 34.24 | 36.39 |
| TraesCS7A01G245800.1 | Wheat | nucleus | 31.29 | 36.03 |
| TraesCS7B01G145800.1 | Wheat | nucleus, plastid | 31.52 | 35.92 |
| GSMUA_Achr7P20490_001 | Banana | nucleus | 28.57 | 35.9 |
| Solyc06g065040.2.1 | Tomato | nucleus | 20.63 | 35.83 |
| TraesCS7D01G244300.1 | Wheat | nucleus, plastid | 31.29 | 35.75 |
| GSMUA_Achr5P22310_001 | Banana | nucleus | 30.61 | 34.88 |
| Zm00001d031441_P001 | Maize | nucleus | 29.93 | 34.74 |
| Os08t0506700-01 | Rice | nucleus | 31.29 | 34.59 |
| Zm00001d021748_P001 | Maize | plastid | 29.02 | 34.22 |
| Solyc01g086870.2.1 | Tomato | nucleus | 31.07 | 33.66 |
| KRH10175 | Soybean | nucleus | 30.84 | 33.01 |
| CDY25213 | Canola | nucleus | 26.76 | 32.42 |
| Bra018896.1-P | Field mustard | nucleus | 26.53 | 32.41 |
| AT1G51140.1 | Thale cress | nucleus | 27.66 | 32.19 |
| Zm00001d020932_P001 | Maize | nucleus | 29.48 | 31.86 |
| CDY22828 | Canola | nucleus | 26.08 | 31.86 |
| Os09t0487900-01 | Rice | nucleus | 28.8 | 31.67 |
| Zm00001d006022_P001 | Maize | nucleus, plastid | 28.8 | 31.28 |
| TraesCS5A01G264800.1 | Wheat | plastid | 28.57 | 30.81 |
| GSMUA_Achr3P11110_001 | Banana | nucleus | 27.44 | 30.71 |
| TraesCS5B01G264300.1 | Wheat | plastid | 28.34 | 30.49 |
| TraesCS5D01G272800.1 | Wheat | plastid | 28.12 | 29.88 |
| KXG35904 | Sorghum | nucleus, plastid | 28.8 | 28.6 |
| OQU80938 | Sorghum | nucleus | 30.16 | 28.6 |
| HORVU2Hr1G073240.1 | Barley | cytosol | 10.43 | 28.05 |
| Solyc09g098110.2.1 | Tomato | nucleus, plastid | 22.68 | 28.01 |
| GSMUA_Achr9P27780_001 | Banana | nucleus | 26.08 | 27.71 |
| HORVU7Hr1G047180.1 | Barley | plastid | 13.83 | 24.3 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0001046 | GO:GO:0001228 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006366 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| InterPro:IPR011598 | InterPro:IPR036638 | UniProt:K4D8X6 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR16223 |
| PANTHER:PTHR16223:SF29 | SMART:SM00353 | SUPFAM:SSF47459 | EnsemblPlantsGene:Solyc11g056650.1 | EnsemblPlants:Solyc11g056650.1.1 | UniParc:UPI000276AABA |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr11:-:47291409..47293946
Molecular Weight (calculated)
48739.7 Da
IEP (calculated)
7.036
GRAVY (calculated)
-0.684
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHSRVEQQP ITSGLTRYRS APSSYFSTLL TTTTPVTGGG CGYARDDFSN LPNSTASSSS TDIEQVFARF VASIGNSNSN SGNFPTNQPI HENPTSNMNV
101: RSDFVVPKQE ITPRLVRHRS SDHSLVSNYQ NQNQHFISPV KREPETLLQS TDHVSASQLN YQSQPQQIEK LNAVTDKPFV FANSASLTPG SSSGGGGNSN
201: LTRYNSSPAG FFAQINIENE YGAIRGIGRY ETGTNAAADT SLSTPKSFKT QVGFSSGKPP ASPRLMAPIS EFGTKVLEEK SMGNEHKNDE HCITDFPMPS
301: WEDSHILSDD FLKTEDIEIE PFSNEDASHN QSSEGLARPP IPLSHHLSLP TSTMEKLLQD SVHLNVRAKR GCATHPRSIA ERVRRTRISD RMRKLQELVP
401: NMDKQTNTAD MLDFAVDYIK ELEKQVKILA ERRAKCTCIN K
101: RSDFVVPKQE ITPRLVRHRS SDHSLVSNYQ NQNQHFISPV KREPETLLQS TDHVSASQLN YQSQPQQIEK LNAVTDKPFV FANSASLTPG SSSGGGGNSN
201: LTRYNSSPAG FFAQINIENE YGAIRGIGRY ETGTNAAADT SLSTPKSFKT QVGFSSGKPP ASPRLMAPIS EFGTKVLEEK SMGNEHKNDE HCITDFPMPS
301: WEDSHILSDD FLKTEDIEIE PFSNEDASHN QSSEGLARPP IPLSHHLSLP TSTMEKLLQD SVHLNVRAKR GCATHPRSIA ERVRRTRISD RMRKLQELVP
401: NMDKQTNTAD MLDFAVDYIK ELEKQVKILA ERRAKCTCIN K
001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.