CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24679	Soybean	nucleus	93.06	93.73
KRH38466	Soybean	nucleus	18.66	92.86
KRH23160	Soybean	nucleus	65.79	67.4
Zm00001d023444_P001	Maize	cytosol	6.94	61.7
KRH10175	Soybean	nucleus	57.42	58.25
VIT_06s0004g01740.t01	Wine grape	nucleus	39.71	55.89
Zm00001d051122_P001	Maize	nucleus	18.9	51.97
KRH44925	Soybean	nucleus	18.18	48.41
HORVU7Hr1G050530.1	Barley	cytosol	29.9	46.47
GSMUA_Achr7P20490_001	Banana	nucleus	36.84	43.87
Zm00001d006578_P001	Maize	nucleus	38.52	43.87
GSMUA_Achr5P22310_001	Banana	nucleus	40.43	43.67
TraesCS7A01G245800.1	Wheat	nucleus	39.95	43.6
TraesCS7B01G145800.1	Wheat	nucleus, plastid	39.47	42.64
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	18.66	42.62
TraesCS7D01G244300.1	Wheat	nucleus, plastid	39.23	42.49
Zm00001d031441_P001	Maize	nucleus	37.32	41.05
Os08t0506700-01	Rice	nucleus	39.0	40.85
CDY22828	Canola	nucleus	35.17	40.72
KRH71888	Soybean	nucleus, plastid	36.6	40.48
Bra018896.1-P	Field mustard	nucleus	34.93	40.44
CDY25213	Canola	nucleus	34.93	40.11
KRH33007	Soybean	nucleus, plastid	36.84	40.1
Zm00001d006022_P001	Maize	nucleus, plastid	37.8	38.92
AT1G51140.1	Thale cress	nucleus	35.17	38.79
Zm00001d021748_P001	Maize	plastid	34.69	38.77
Zm00001d020932_P001	Maize	nucleus	37.32	38.24
KRG93108	Soybean	extracellular	25.84	37.76
KRG95337	Soybean	nucleus	33.97	37.08
KRH67021	Soybean	nucleus	34.21	36.95
Solyc12g100140.1.1	Tomato	nucleus	39.23	36.44
Os09t0487900-01	Rice	nucleus	34.93	36.41
GSMUA_Achr3P11110_001	Banana	nucleus	34.21	36.29
TraesCS5B01G264300.1	Wheat	plastid	34.69	35.37
OQU80938	Sorghum	nucleus	39.23	35.27
TraesCS5A01G264800.1	Wheat	plastid	34.21	34.96
TraesCS5D01G272800.1	Wheat	plastid	34.69	34.94
Solyc11g056650.1.1	Tomato	nucleus	36.84	34.92
PGSC0003DMT400056716	Potato	nucleus	36.6	34.69
KXG35904	Sorghum	nucleus, plastid	36.6	34.46
PGSC0003DMT400061284	Potato	nucleus	39.95	34.15
GSMUA_Achr9P27780_001	Banana	nucleus	33.49	33.73
KRH20846	Soybean	nucleus	34.69	33.1
KRH27501	Soybean	nucleus	33.97	32.72
KRH43476	Soybean	nucleus	34.45	32.0
HORVU2Hr1G073240.1	Barley	cytosol	12.44	31.71
KRH13908	Soybean	extracellular, nucleus	34.21	31.36
HORVU7Hr1G047180.1	Barley	plastid	16.99	28.29

Protein Annotations

EntrezGene:100789855	MapMan:15.5.32	Gene3D:4.10.280.10	EMBL:ACUP02006815	ncoils:Coil	EnsemblPlantsGene:GLYMA_11G131200
GO:GO:0001046	GO:GO:0001228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006366	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	UniProt:I1LJT5	InterPro:IPR011598	InterPro:IPR036638
EnsemblPlants:KRH29679	ProteinID:KRH29679	ProteinID:KRH29679.1	EMBL:KT031118	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR16223	PANTHER:PTHR16223:SF69	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000233D285	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:10011043..10015654

Molecular Weight (calculated)

45979.3 Da

IEP (calculated)

6.354

GRAVY (calculated)

-0.822

Length

418 amino acids

Sequence
(BLAST)

001: MESDLQQHPP MFLDHHQQQM NSGLTRYRSA PSSYFSSIID HEFYEHVFNR PSSPETERML TRFVNSLGGG DADAEDSLAT TQNPPTVVAV KEEVNQQPPD
101: VTSMNNEPLV LQQQQQQQQQ QQQSNNMYNY GSSGTQNFYQ STGRPPLPNQ MKTGHGSSSN LIRHGSSPAG LFSNINIDIT GYAAVVRGMG TMGAAANNTS
201: EEANFSPATR MKNNAPNFSS GLMSSRAEVG NKSNTQNNNA ENEGFAESQG NEFIPAGFPV GPWNDSAIMS DNVTGLKRFR DEDVKPFSGG LNAPESQNET
301: GGQQPSSSAL AHQLSLPNTS AEMAAIEKFL QLSDSVPCKI RAKRGCATHP RSIAERVRRT KISERMRKLQ DLVPNMDKQT NTADMLDLAV EYIKDLQNQV
401: QTLSDNRAKC TCSHKKQQ

Best Arabidopsis Sequence Match ( AT1G51140.1 )
(BLAST)

001: MESEFQQHHF LLHDHQHQRP RNSGLIRYQS APSSYFSSFG ESIEEFLDRP TSPETERILS GFLQTTDTSD NVDSFLHHTF NSDGTEKKPP EVKTEDEDAE
101: IPVTATATAM EVVVSGDGEI SVNPEVSIGY VASVSRNKRP REKDDRTPVN NLARHNSSPA GLFSSIDVET AYAAVMKSMG GFGGSNVMST SNTEASSLTP
201: RSKLLPPTSR AMSPISEVDV KPGFSSRLPP RTLSGGFNRS FGNEGSASSK LTALARTQSG GLDQYKTKDE DSASRRPPLA HHMSLPKSLS DIEQLLSDSI
301: PCKIRAKRGC ATHPRSIAER VRRTKISERM RKLQDLVPNM DTQTNTADML DLAVQYIKDL QEQVKALEES RARCRCSSA

Arabidopsis Description

BHLH122Transcription factor bHLH122 [Source:UniProtKB/Swiss-Prot;Acc:Q9C690]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.