CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031441_P001	Maize	nucleus	67.74	82.89
TraesCS7D01G244300.1	Wheat	nucleus, plastid	63.44	76.42
TraesCS7B01G145800.1	Wheat	nucleus, plastid	62.8	75.45
TraesCS7A01G245800.1	Wheat	nucleus	61.72	74.93
Os08t0506700-01	Rice	nucleus	63.23	73.68
HORVU7Hr1G050530.1	Barley	cytosol	40.86	70.63
KRH38466	Soybean	nucleus	10.32	57.14
KXG35904	Sorghum	nucleus, plastid	52.9	55.41
VIT_06s0004g01740.t01	Wine grape	nucleus	31.61	49.49
CDY53498	Canola	nucleus, plastid	29.68	42.46
Bra004678.1-P	Field mustard	nucleus, plastid	29.46	42.02
CDX79884	Canola	nucleus, plastid	29.25	41.59
KRH23160	Soybean	nucleus	36.34	41.42
CDY47961	Canola	nucleus	30.97	41.38
VIT_08s0007g07810.t01	Wine grape	nucleus	35.05	41.37
CDY14822	Canola	nucleus	30.54	41.16
Bra016886.1-P	Field mustard	nucleus	30.75	41.09
GSMUA_Achr3P11110_001	Banana	nucleus	34.62	40.86
AT2G42280.3	Thale cress	nucleus	31.61	40.83
KRH71888	Soybean	nucleus, plastid	32.69	40.21
KRH24679	Soybean	nucleus	35.27	39.52
KRH29679	Soybean	nucleus	35.27	39.23
PGSC0003DMT400021062	Potato	nucleus	31.61	38.68
GSMUA_Achr9P27780_001	Banana	nucleus	34.19	38.31
KRH33007	Soybean	nucleus, plastid	31.61	38.28
KXG26599	Sorghum	nucleus	16.56	38.12
Solyc10g079050.1.1	Tomato	nucleus	30.97	37.89
VIT_13s0064g01290.t01	Wine grape	nucleus, plastid	31.18	37.86
PGSC0003DMT400065029	Potato	nucleus	31.83	37.28
KRH67021	Soybean	nucleus	30.54	36.69
KRG95337	Soybean	nucleus	29.89	36.29
Solyc01g086870.2.1	Tomato	nucleus	30.54	34.89
AT1G51140.1	Thale cress	nucleus	28.39	34.83
Bra018896.1-P	Field mustard	nucleus	26.67	34.35
KRH10175	Soybean	nucleus	30.32	34.22
CDY22828	Canola	nucleus	26.24	33.8
CDY25213	Canola	nucleus	26.45	33.79
Solyc12g100140.1.1	Tomato	nucleus	31.61	32.67
KRH27501	Soybean	nucleus	29.68	31.8
EES05388	Sorghum	nucleus	22.8	31.36
KRH20846	Soybean	nucleus	29.46	31.28
PGSC0003DMT400056716	Potato	nucleus	29.03	30.61
PGSC0003DMT400061284	Potato	nucleus	31.83	30.27
Solyc11g056650.1.1	Tomato	nucleus	28.6	30.16
KRH43476	Soybean	nucleus	28.17	29.11
KRH13908	Soybean	extracellular, nucleus	27.74	28.29
KXG33923	Sorghum	plastid	26.02	27.75

Protein Annotations

EnsemblPlants:OQU80938	EnsemblPlantsGene:SORBI_3007G211000	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR16223
PANTHER:PTHR16223:SF69	PFAM:PF00010	PFscan:PS50888	ProteinID:OQU80938	ProteinID:OQU80938.1	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000B425BD5	UniProt:A0A1Z5RB06	MapMan:15.5.32	:

Description

hypothetical protein

Coordinates

chr7:-:63992583..63995898

Molecular Weight (calculated)

49058.6 Da

IEP (calculated)

6.992

GRAVY (calculated)

-0.508

Length

465 amino acids

Sequence
(BLAST)

001: MLFVSNNFNL FLDEQSRWPE ISNPYPSSIF LFILFSCAAG SEQKPPGELM YGSPVSKDLN LPVQPPMTSS GLLRYRSAPS TVLGDLCEDL LPPAPGAGPP
101: RDGADNVISR FLADHHHHIR DDKPSPPPPP AAAPAHFPSA ADMASQQHQH QQMMFHSQSQ QQHMVDANKP GGLYRTVSSG MEDAAGTGAG VGVGAASNLI
201: RQSSSPAGFL DHFSMDNGYG AMLRASMGMG FRDGSGGVGG AGGAATDSLA GGGGGGGSGS GRLKGQLSFS SRQGSLMSQI SEMDSEEIGG SSPEAAAGGR
301: GGYIPGYPMS SAGWDDSSSA LMSDSLSGMK RPRDSSEPGG QQQQQQQNGG GGLAHQFSLP KTSSEMAAIE KFLQFQDAVP CKIRAKRGCA THPRSIAERV
401: RRTKISERIR KLQELVPNMD KQTNTSDMLD LAVDYIKDLQ KQVKALNESR ASCTCPASKH QQFSG

Best Arabidopsis Sequence Match ( AT2G42280.1 )
(BLAST)

001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.