Factsheet for Bra016886.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47961	Canola	nucleus	99.14	99.14
Bra004678.1-P	Field mustard	nucleus, plastid	74.14	79.14
AT2G42280.3	Thale cress	nucleus	81.03	78.33
Zm00001d023444_P001	Maize	cytosol	8.33	61.7
Zm00001d051122_P001	Maize	nucleus	20.98	48.03
KRH71888	Soybean	nucleus, plastid	48.28	44.44
VIT_08s0007g07810.t01	Wine grape	nucleus	48.85	43.15
KRH33007	Soybean	nucleus, plastid	46.84	42.45
Solyc10g079050.1.1	Tomato	nucleus	45.69	41.84
PGSC0003DMT400021062	Potato	nucleus	45.4	41.58
KRH67021	Soybean	nucleus	45.11	40.57
KRG95337	Soybean	nucleus	44.54	40.47
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	20.69	39.34
HORVU7Hr1G050530.1	Barley	cytosol	28.74	37.17
Zm00001d006578_P001	Maize	nucleus	39.08	37.06
Bra034421.1-P	Field mustard	nucleus	25.29	36.21
Bra000291.1-P	Field mustard	nucleus	20.4	34.98
Zm00001d031441_P001	Maize	nucleus	37.93	34.74
TraesCS7A01G245800.1	Wheat	nucleus	38.22	34.73
TraesCS7D01G244300.1	Wheat	nucleus, plastid	38.51	34.72
GSMUA_Achr7P20490_001	Banana	nucleus	34.77	34.47
TraesCS7B01G145800.1	Wheat	nucleus, plastid	38.22	34.37
Os08t0506700-01	Rice	nucleus	39.37	34.34
GSMUA_Achr5P22310_001	Banana	nucleus	37.93	34.11
Bra018896.1-P	Field mustard	nucleus	35.34	34.07
Bra036760.1-P	Field mustard	nucleus	22.99	33.47
Zm00001d021748_P001	Maize	plastid	35.63	33.16
Zm00001d006022_P001	Maize	nucleus, plastid	37.93	32.51
Zm00001d020932_P001	Maize	nucleus	37.36	31.86
Os09t0487900-01	Rice	nucleus	36.49	31.67
Bra028088.1-P	Field mustard	nucleus	24.14	31.58
GSMUA_Achr3P11110_001	Banana	nucleus	35.63	31.47
Bra015456.1-P	Field mustard	nucleus, plastid	32.47	31.39
GSMUA_Achr9P27780_001	Banana	nucleus	37.36	31.33
OQU80938	Sorghum	nucleus	41.09	30.75
TraesCS5D01G272800.1	Wheat	plastid	35.92	30.12
Bra004748.1-P	Field mustard	nucleus	26.44	30.07
TraesCS5B01G264300.1	Wheat	plastid	35.34	30.0
TraesCS5A01G264800.1	Wheat	plastid	34.48	29.34
HORVU2Hr1G073240.1	Barley	cytosol	13.79	29.27
KXG35904	Sorghum	nucleus, plastid	36.78	28.83
Bra037732.1-P	Field mustard	nucleus	23.85	27.3
HORVU7Hr1G047180.1	Barley	plastid	19.54	27.09

Protein Annotations

EnsemblPlants:Bra016886.1	EnsemblPlants:Bra016886.1-P	EnsemblPlantsGene:Bra016886	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR16223	PANTHER:PTHR16223:SF67	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025438DC	UniProt:M4DK58	MapMan:15.5.32	:

Description

AT2G42280 (E=3e-146) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA04:-:17747680..17749668

Molecular Weight (calculated)

39020.8 Da

IEP (calculated)

8.017

GRAVY (calculated)

-0.775

Length

348 amino acids

Sequence
(BLAST)

001: MDSNHLYDPN HIPSSGSGLL RFRSAPSSVL AAFVADDNKS GLDSDRLISR FARSNGPSEF EAKSPVTSVS YAATLPPPQQ QPEPSSFLGL PPHYPRQSKR
101: MMNTIGLDQF LNDHHTKPVE SNLLRQSSSP AEMFTNPTAQ NGYGSVRSLM NYEEDEQSPS SSSELRRHNS LSSRPPSSLG MLSQIPEIAS ESSFQYSHWN
201: DPASFIDNLS SLKRETEDDG KLFQNGESGN RMQLLSHHLS LPNASSTASD MVTVDKYMQL QDSVPCRIRA KRGCATHPRS IAERVRRTKI SERMRKLQEL
301: VPNMDKQTNT ADMLDLAVDY IKDLQRQYKI LNENRANCKC MNKEKNLI

Best Arabidopsis Sequence Match ( AT2G42280.1 )
(BLAST)

001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI

Arabidopsis Description

basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.