Factsheet for Bra028088.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61281	Canola	nucleus	88.72	94.02
Bra036760.1-P	Field mustard	nucleus	75.56	84.1
Bra034421.1-P	Field mustard	nucleus	71.8	78.6
AT1G35460.1	Thale cress	nucleus	75.94	77.99
KRH44925	Soybean	nucleus	35.71	60.51
VIT_18s0041g00690.t01	Wine grape	mitochondrion, nucleus	50.38	53.39
Solyc06g065040.2.1	Tomato	nucleus	49.62	51.97
PGSC0003DMT400080418	Potato	mitochondrion, nucleus	49.62	50.77
Bra000291.1-P	Field mustard	nucleus	22.56	29.56
Bra004678.1-P	Field mustard	nucleus, plastid	31.58	25.77
Bra004748.1-P	Field mustard	nucleus	27.82	24.18
Bra016886.1-P	Field mustard	nucleus	31.58	24.14
Bra015456.1-P	Field mustard	nucleus, plastid	31.2	23.06
Bra037732.1-P	Field mustard	nucleus	24.81	21.71
Bra018896.1-P	Field mustard	nucleus	28.2	20.78

Protein Annotations

EnsemblPlants:Bra028088.1	EnsemblPlants:Bra028088.1-P	EnsemblPlantsGene:Bra028088	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR16223	PANTHER:PTHR16223:SF104	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002542861	UniProt:M4EH23	MapMan:15.5.32	:	:

Description

AT1G35460 (E=8e-072) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA09:+:18443894..18445578

Molecular Weight (calculated)

29478.4 Da

IEP (calculated)

4.673

GRAVY (calculated)

-0.693

Length

266 amino acids

Sequence
(BLAST)

001: MQSTHSGGGG EGGGGGGGDV SRGGLSRIRS APATWIETLL EDDEEDDLKP NLCLTELLTG NSAGLTSPDT FDFPSSVEQG LYNHQSGFYR QNSSPADFLS
101: GSGATTDGVL SNFEIPANYD YLPPNVNISP GSKRSREIEA QFSSQMKEEQ MSSGVSGMMD MNMDTLLDDS VPFRVRAKRG CATHPRSIAE RMRRTRISDR
201: IRRLQELVPN MDKQTNTADM LEEAVEYVKA LQRQIQVYIY ININLAYEMR ENDSRKICRK EQLSND

Best Arabidopsis Sequence Match ( AT1G35460.1 )
(BLAST)

001: MQSTHISGGS SGGGGGGGGE VSRSGLSRIR SAPATWIETL LEEDEEEGLK PNLCLTELLT GNNNSGGVIT SRDDSFEFLS SVEQGLYNHH QGGGFHRQNS
101: SPADFLSGSG SGTDGYFSNF GIPANYDYLS TNVDISPTKR SRDMETQFSS QLKEEQMSGG ISGMMDMNMD KIFEDSVPCR VRAKRGCATH PRSIAERVRR
201: TRISDRIRRL QELVPNMDKQ TNTADMLEEA VEYVKALQSQ IQELTEQQKR CKCKPKEEQ

Arabidopsis Description

BHLH80Transcription factor bHLH80 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.