Factsheet for Bra018896.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22828	Canola	nucleus	99.45	99.45
CDY25213	Canola	nucleus	98.06	97.25
AT1G51140.1	Thale cress	nucleus	85.32	81.27
Zm00001d023444_P001	Maize	cytosol	7.48	57.45
Zm00001d051122_P001	Maize	nucleus	18.84	44.74
KRH38466	Soybean	nucleus	9.7	41.67
VIT_06s0004g01740.t01	Wine grape	nucleus	33.8	41.08
HORVU5Hr1G073170.5	Barley	cytosol, nucleus, plastid	19.67	38.8
Bra004678.1-P	Field mustard	nucleus, plastid	33.24	36.81
KRH23160	Soybean	nucleus	40.44	35.78
Bra016886.1-P	Field mustard	nucleus	34.07	35.34
KRH29679	Soybean	nucleus	40.44	34.93
KRH24679	Soybean	nucleus	39.34	34.22
Bra000291.1-P	Field mustard	nucleus	18.84	33.5
HORVU7Hr1G050530.1	Barley	cytosol	24.93	33.46
GSMUA_Achr7P20490_001	Banana	nucleus	32.13	33.05
GSMUA_Achr5P22310_001	Banana	nucleus	35.18	32.82
TraesCS7A01G245800.1	Wheat	nucleus	34.07	32.11
Zm00001d006578_P001	Maize	nucleus	32.41	31.88
TraesCS7D01G244300.1	Wheat	nucleus, plastid	34.07	31.87
Zm00001d031441_P001	Maize	nucleus	33.52	31.84
TraesCS7B01G145800.1	Wheat	nucleus, plastid	34.07	31.78
Bra034421.1-P	Field mustard	nucleus	21.33	31.69
Bra036760.1-P	Field mustard	nucleus	20.78	31.38
Os08t0506700-01	Rice	nucleus	33.52	30.33
KRH10175	Soybean	nucleus	34.35	30.1
GSMUA_Achr3P11110_001	Banana	nucleus	32.41	29.7
Zm00001d020932_P001	Maize	nucleus	33.52	29.66
Zm00001d006022_P001	Maize	nucleus, plastid	32.96	29.31
Bra004748.1-P	Field mustard	nucleus	24.65	29.09
Os09t0487900-01	Rice	nucleus	32.13	28.93
TraesCS5D01G272800.1	Wheat	plastid	32.96	28.67
Zm00001d021748_P001	Maize	plastid	29.36	28.34
Bra015456.1-P	Field mustard	nucleus, plastid	28.25	28.33
TraesCS5B01G264300.1	Wheat	plastid	32.13	28.29
Solyc12g100140.1.1	Tomato	nucleus	35.18	28.22
Bra028088.1-P	Field mustard	nucleus	20.78	28.2
TraesCS5A01G264800.1	Wheat	plastid	31.58	27.87
PGSC0003DMT400056716	Potato	nucleus	33.24	27.21
OQU80938	Sorghum	nucleus	34.35	26.67
Bra037732.1-P	Field mustard	nucleus	22.44	26.64
Solyc11g056650.1.1	Tomato	nucleus	32.41	26.53
GSMUA_Achr9P27780_001	Banana	nucleus	30.19	26.27
KXG35904	Sorghum	nucleus, plastid	32.13	26.13
PGSC0003DMT400061284	Potato	nucleus	34.9	25.77
HORVU2Hr1G073240.1	Barley	cytosol	11.36	25.0
HORVU7Hr1G047180.1	Barley	plastid	15.51	22.31

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra018896	EnsemblPlants:Bra018896.1	EnsemblPlants:Bra018896.1-P	ncoils:Coil
GO:GO:0000003	GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987
GO:GO:0010119	GO:GO:0042335	GO:GO:0046983	GO:GO:0048573	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M4DQV3	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF29
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000253E9FF	InterPro:bHLH_dom	SEG:seg	:

Description

AT1G51140 (E=3e-143) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA06:+:1391902..1393455

Molecular Weight (calculated)

39966.9 Da

IEP (calculated)

7.103

GRAVY (calculated)

-0.694

Length

361 amino acids

Sequence
(BLAST)

001: MESEFQQHHF LLHDHQHQRP PRASGLVRYQ SAPSSYFSSF GESIEEFLDR PTSPETERIL SGFLQTTDTS NNVDSFLHHT FSETENKPPE VKTEEETVVD
101: DIPAMEVGEM APPVSTGYAS VVRSLGQNKR PRDDRTPASN LARHNSSPAG LFSSIDVETA YAAVMKNMGG FGVMNMSNNS TEASSLTPRS KLPPPSMGSI
201: PEIDDVKPVF SSRLPPRTLS GGFNQGSASS KRMAIARTQS GGLDQYKTKD EDSSASRRPP LAHHMSLPKS LSDIEQLLSD SIPCKIRAKR GCATHPRSIA
301: ERVRRTKISE RMRKLQDLVP NMDTQTNTAD MLDLAVQYIK DLQEQVKGLE ESRARCRCSC A

Best Arabidopsis Sequence Match ( AT1G51140.1 )
(BLAST)

001: MESEFQQHHF LLHDHQHQRP RNSGLIRYQS APSSYFSSFG ESIEEFLDRP TSPETERILS GFLQTTDTSD NVDSFLHHTF NSDGTEKKPP EVKTEDEDAE
101: IPVTATATAM EVVVSGDGEI SVNPEVSIGY VASVSRNKRP REKDDRTPVN NLARHNSSPA GLFSSIDVET AYAAVMKSMG GFGGSNVMST SNTEASSLTP
201: RSKLLPPTSR AMSPISEVDV KPGFSSRLPP RTLSGGFNRS FGNEGSASSK LTALARTQSG GLDQYKTKDE DSASRRPPLA HHMSLPKSLS DIEQLLSDSI
301: PCKIRAKRGC ATHPRSIAER VRRTKISERM RKLQDLVPNM DTQTNTADML DLAVQYIKDL QEQVKALEES RARCRCSSA

Arabidopsis Description

BHLH122Transcription factor bHLH122 [Source:UniProtKB/Swiss-Prot;Acc:Q9C690]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.