Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 4
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79884 | Canola | nucleus, plastid | 96.32 | 96.02 |
| Bra016886.1-P | Field mustard | nucleus | 79.14 | 74.14 |
| AT2G42280.3 | Thale cress | nucleus | 76.38 | 69.17 |
| Zm00001d023444_P001 | Maize | cytosol | 9.2 | 63.83 |
| Zm00001d051122_P001 | Maize | nucleus | 23.62 | 50.66 |
| KRH71888 | Soybean | nucleus, plastid | 50.61 | 43.65 |
| VIT_08s0007g07810.t01 | Wine grape | nucleus | 51.23 | 42.39 |
| KRH33007 | Soybean | nucleus, plastid | 49.08 | 41.67 |
| HORVU5Hr1G073170.5 | Barley | cytosol, nucleus, plastid | 23.01 | 40.98 |
| Solyc10g079050.1.1 | Tomato | nucleus | 47.55 | 40.79 |
| PGSC0003DMT400021062 | Potato | nucleus | 47.24 | 40.53 |
| KRG95337 | Soybean | nucleus | 45.4 | 38.64 |
| KRH67021 | Soybean | nucleus | 45.71 | 38.5 |
| HORVU7Hr1G050530.1 | Barley | cytosol | 30.37 | 36.8 |
| Zm00001d006578_P001 | Maize | nucleus | 41.41 | 36.78 |
| Bra034421.1-P | Field mustard | nucleus | 26.99 | 36.21 |
| Zm00001d031441_P001 | Maize | nucleus | 40.49 | 34.74 |
| TraesCS7A01G245800.1 | Wheat | nucleus | 40.49 | 34.46 |
| TraesCS7D01G244300.1 | Wheat | nucleus, plastid | 40.49 | 34.2 |
| Os08t0506700-01 | Rice | nucleus | 41.72 | 34.09 |
| Bra000291.1-P | Field mustard | nucleus | 21.17 | 33.99 |
| TraesCS7B01G145800.1 | Wheat | nucleus, plastid | 40.18 | 33.85 |
| Bra036760.1-P | Field mustard | nucleus | 24.54 | 33.47 |
| GSMUA_Achr7P20490_001 | Banana | nucleus | 35.89 | 33.33 |
| Bra018896.1-P | Field mustard | nucleus | 36.81 | 33.24 |
| Zm00001d021748_P001 | Maize | plastid | 37.12 | 32.35 |
| Zm00001d006022_P001 | Maize | nucleus, plastid | 39.88 | 32.02 |
| Bra028088.1-P | Field mustard | nucleus | 25.77 | 31.58 |
| GSMUA_Achr5P22310_001 | Banana | nucleus | 37.42 | 31.52 |
| Os09t0487900-01 | Rice | nucleus | 38.65 | 31.42 |
| Zm00001d020932_P001 | Maize | nucleus | 38.96 | 31.13 |
| Bra015456.1-P | Field mustard | nucleus, plastid | 34.05 | 30.83 |
| GSMUA_Achr3P11110_001 | Banana | nucleus | 37.12 | 30.71 |
| TraesCS5B01G264300.1 | Wheat | plastid | 38.04 | 30.24 |
| TraesCS5D01G272800.1 | Wheat | plastid | 38.34 | 30.12 |
| HORVU2Hr1G073240.1 | Barley | cytosol | 15.03 | 29.88 |
| TraesCS5A01G264800.1 | Wheat | plastid | 37.42 | 29.83 |
| GSMUA_Achr9P27780_001 | Banana | nucleus | 37.73 | 29.64 |
| OQU80938 | Sorghum | nucleus | 42.02 | 29.46 |
| Bra004748.1-P | Field mustard | nucleus | 27.3 | 29.09 |
| KXG35904 | Sorghum | nucleus, plastid | 38.34 | 28.15 |
| Bra037732.1-P | Field mustard | nucleus | 24.23 | 25.99 |
| HORVU7Hr1G047180.1 | Barley | plastid | 19.33 | 25.1 |
Protein Annotations
| EnsemblPlants:Bra004678.1 | EnsemblPlants:Bra004678.1-P | EnsemblPlantsGene:Bra004678 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| ncoils:Coil | PANTHER:PTHR16223 | PANTHER:PTHR16223:SF67 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0002547896 | UniProt:M4CKE3 | MapMan:15.5.32 | : |
Description
AT2G42280 (E=1e-054) | basic helix-loop-helix (bHLH) family protein
Coordinates
chrA05:+:1341330..1342795
Molecular Weight (calculated)
36639.8 Da
IEP (calculated)
7.069
GRAVY (calculated)
-0.819
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSNTQNHLY DPNQVSSSSG SGLLRFRSAP SSVLAAFVDD NDKTVLNSNE FENKSRVSYA AAPPPQQEPS SFLGLPPHYP KQSNGVMMMN TIGLDQFLSM
101: NHHHHTRQAE SHLLRQSSSP AGTFTNLSDQ NGYCYVGEEE EEEESPSHPN GLRRHSSLSS RPPSSLGMLS QIPEIDSESV QYSHWNHPST SFIDNLSSLK
201: RETEDDGKLF HGAQIMSHHL SLPKSASDMG SVDKYLQLQD SVPCKVRAKR GCATHPRSIA ERVRRTKISE RMRKLQELVP NMDKQTNTSD MLDLAVDYIK
301: DLQRQYKILN ENRANCKCVN KEKNLI
101: NHHHHTRQAE SHLLRQSSSP AGTFTNLSDQ NGYCYVGEEE EEEESPSHPN GLRRHSSLSS RPPSSLGMLS QIPEIDSESV QYSHWNHPST SFIDNLSSLK
201: RETEDDGKLF HGAQIMSHHL SLPKSASDMG SVDKYLQLQD SVPCKVRAKR GCATHPRSIA ERVRRTKISE RMRKLQELVP NMDKQTNTSD MLDLAVDYIK
301: DLQRQYKILN ENRANCKCVN KEKNLI
001: MDSNNHLYDP NPTGSGLLRF RSAPSSVLAA FVDDDKIGFD SDRLLSRFVT SNGVNGDLGS PKFEDKSPVS LTNTSVSYAA TLPPPPQLEP SSFLGLPPHY
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
101: PRQSKGIMNS VGLDQFLGIN NHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGSMRNLMNY EEDEESPSNS NGLRRHCSLS SRPPSSLGML SQIPEIAPET
201: NFPYSHWNDP SSFIDNLSSL KREAEDDGKL FLGAQNGESG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR SIAERVRRTR
301: ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNDNRANCK CMNKEKKSI
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT2G42280]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.