Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83499 | Canola | nucleus | 100.0 | 100.0 |
| Bra004748.1-P | Field mustard | nucleus | 83.74 | 55.56 |
| AT2G43140.2 | Thale cress | nucleus | 81.77 | 53.72 |
| Bra037732.1-P | Field mustard | nucleus | 70.94 | 47.37 |
| KRG93108 | Soybean | extracellular | 51.72 | 36.71 |
| KXG26599 | Sorghum | nucleus | 36.45 | 36.63 |
| VIT_05s0124g00240.t01 | Wine grape | plastid | 56.16 | 32.29 |
| GSMUA_Achr6P21220_001 | Banana | vacuole | 43.84 | 31.9 |
| PGSC0003DMT400016793 | Potato | nucleus, plastid | 50.74 | 29.6 |
| Bra015456.1-P | Field mustard | nucleus, plastid | 51.23 | 28.89 |
| Solyc09g098110.2.1 | Tomato | nucleus, plastid | 48.77 | 27.73 |
| Zm00001d017138_P001 | Maize | nucleus | 41.87 | 26.15 |
| TraesCS6B01G244800.1 | Wheat | nucleus | 38.92 | 26.07 |
| GSMUA_Achr1P27710_001 | Banana | nucleus | 42.86 | 25.97 |
| TraesCS6D01G197500.1 | Wheat | nucleus | 38.92 | 25.65 |
| Bra034421.1-P | Field mustard | nucleus | 30.54 | 25.51 |
| EES05388 | Sorghum | nucleus | 42.36 | 25.44 |
| GSMUA_Achr8P01370_001 | Banana | nucleus | 40.39 | 25.39 |
| TraesCS6A01G214900.1 | Wheat | nucleus | 38.92 | 25.16 |
| HORVU6Hr1G054910.7 | Barley | nucleus | 38.42 | 24.07 |
| Bra036760.1-P | Field mustard | nucleus | 28.08 | 23.85 |
| Os04t0489600-02 | Rice | nucleus | 42.86 | 23.58 |
| Os02t0603600-01 | Rice | nucleus | 19.7 | 22.6 |
| Bra028088.1-P | Field mustard | nucleus | 29.56 | 22.56 |
| Zm00001d042482_P001 | Maize | nucleus | 39.41 | 22.1 |
| TraesCS3D01G388700.1 | Wheat | nucleus | 39.41 | 21.86 |
| TraesCS3B01G426900.1 | Wheat | nucleus | 38.92 | 21.29 |
| Bra004678.1-P | Field mustard | nucleus, plastid | 33.99 | 21.17 |
| Os01t0900800-01 | Rice | nucleus | 39.9 | 20.93 |
| TraesCS3A01G395000.1 | Wheat | nucleus | 37.93 | 20.75 |
| HORVU3Hr1G089090.2 | Barley | nucleus | 38.42 | 20.63 |
| Bra016886.1-P | Field mustard | nucleus | 34.98 | 20.4 |
| GSMUA_Achr8P32130_001 | Banana | mitochondrion | 40.39 | 19.43 |
| Bra018896.1-P | Field mustard | nucleus | 33.5 | 18.84 |
| KXG33923 | Sorghum | plastid | 38.92 | 18.12 |
Protein Annotations
| EnsemblPlants:Bra000291.1 | EnsemblPlants:Bra000291.1-P | EnsemblPlantsGene:Bra000291 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF51 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000253FCDC | UniProt:M4C7W3 | MapMan:15.5.32 | : | : |
Description
AT2G43140 (E=7e-069) | DNA binding / transcription factor
Coordinates
chrA03:-:10363384..10365568
Molecular Weight (calculated)
22525.5 Da
IEP (calculated)
7.618
GRAVY (calculated)
-0.833
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGTGFPLG RPNGRYGGGG ERVPSRLKSE LRFSGGGSNS HQEHNSEVEG PSAINGVAST SMSFGNDHDN WDNSPSHISF TIDEPGKRSK TTDFFTLETP
101: FSMPQTSLEM ESLINIPEDS VPWKVRAKRG CATHPRSIAE RERRTRISGK LKKLQELVPN MEKQTSYADM LDLAVEHIKG LQHHIESLEK GIERCTCGAC
201: KKR
101: FSMPQTSLEM ESLINIPEDS VPWKVRAKRG CATHPRSIAE RERRTRISGK LKKLQELVPN MEKQTSYADM LDLAVEHIKG LQHHIESLEK GIERCTCGAC
201: KKR
001: MEEGTGFSLG RPNGGYGGGG EQGPSRLKSE LRFSSGSSSH QEHNSLPRIS EVEAAAAARN GVASSSMSFG NNRTNNWDNS SSHISFTIDQ PGKRSKNSDF
101: FTLETQYSMP QTTLEMATME NLMNIPEDSV PCRARAKRGF ATHPRSIAER ERRTRISGKL KKLQELVPNM DKQTSYADML DLAVEHIKGL QHQVESLEKG
201: MERCTCGACK KR
101: FTLETQYSMP QTTLEMATME NLMNIPEDSV PCRARAKRGF ATHPRSIAER ERRTRISGKL KKLQELVPNM DKQTSYADML DLAVEHIKGL QHQVESLEKG
201: MERCTCGACK KR
Arabidopsis Description
Basic helix-loop-helix (BHLH) DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.